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[187471_at]

Description Y62E10A.11B /REP_DB=WormBase Gene ID /WP=CE22701 /TR=Q9U1X4 /GB=CAB60600.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 21      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 75      6grp_total > 32      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 70      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 599
1 2 3 4 range
A 859.5
(1.7)
P 		964.3
(3)
P 		931.1
(2.6)
P 		465.3
(-3)
P 		499
B 946.1
(1.6)
P 		1044.5
(2.8)
P 		1062.1
(3)
P 		549.9
(-3)
P 		512
C 1021.5
(2.4)
P 		1064.1
(3)
P 		1047.1
(2.8)
P 		655.2
(-3)
P 		409
avr 942.4
(1.9) 		1024.3
(3) 		1013.4
(2.9) 		556.8
(-3) 		468

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 339
1 2 3 4 5 6 range
A 879
(-0.8)
P 		893.6
(-0.4)
P 		1038.8
(3)
P 		968.7
(1.4)
P 		857.8
(-1.3)
P 		783.6
(-3)
P 		255
B 981.5
(0.6)
P 		950
(-0.1)
P 		955.9
(0)
P 		811.6
(-3)
P 		1095.8
(3)
P 		814.8
(-2.9)
P 		284
C 976.7
(3)
P 		849.8
(-0.5)
P 		867.2
(0)
P 		936.1
(1.9)
P 		881.3
(0.4)
P 		756.8
(-3)
P 		220
avr 945.7
(2.7) 		897.8
(1) 		954
(3) 		905.5
(1.3) 		945
(2.7) 		785.1
(-3) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 312.9
(3)
P 		209.3
(0.5)
P 		243.4
(1.3)
P 		68.1
(-3)
P 		245
B 301.7
(3)
P 		258
(1.6)
P 		246.1
(1.2)
P 		117.2
(-3)
P 		185
C 338.1
(2.4)
P 		305.9
(1.6)
P 		365
(3)
P 		110.5
(-3)
P 		255
avr 317.6
(3) 		257.7
(1.4) 		284.8
(2.1) 		98.6
(-3) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 162
(-3)
P 		317.8
(3)
P 		226.2
(-0.5)
P 		245.7
(0.2)
P 		258.8
(0.7)
P 		190.8
(-1.9)
P 		156
B 341.5
(0.3)
P 		316.2
(-0.4)
P 		232.1
(-2.6)
P 		215
(-3)
P 		445.2
(3)
P 		303.8
(-0.7)
P 		230
C 362
(3)
P 		259.3
(-0.5)
P 		220.7
(-1.9)
P 		188.3
(-3)
P 		285.2
(0.3)
P 		253.4
(-0.8)
P 		174
avr 288.5
(0.8) 		297.8
(1.3) 		226.3
(-2.5) 		216.3
(-3) 		329.7
(3) 		249.3
(-1.3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9208
Sequence Type Exemplar sequence
Representative Public ID Y62E10A.11B NCBI
Target Description Y62E10A.11B /REP_DB=WormBase Gene ID /WP=CE22701 /TR=Q9U1X4 /GB=CAB60600.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070178
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000008080 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13386864:13387211:1 11/11 None
GENEFINDER00000008098 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13386864:13387211:1 11/11 None
Y62E10A.11 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:13386348:13387211:1 gene:Y62E10A.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13386869-13387217(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y62E10A.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast Q9U1X4 Guanine nucleotide exchange factor MSS4 homolog 1.0E-47
blast CAE58610 Hypothetical protein CBG01777 [Caenorhabditis briggsae] 3.0E-40
blast EAL33946 GA20587-PA [Drosophila pseudoobscura] 2.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR007515 EMBL-EBI Mss4 2.3E-47
Sequence
Target Sequence 
>C. ELEGANS:187471_AT
atgactactgaatatctcgacgaagaacgtgatcttccattgccacgtcaaaagaaagga
atcgatcatactcagacagagccgatccgtggatttttcggagtcaaggatatgttcgct
tttgaaaatgttggatttacaagatcttctgaaggcaaacgatatctggtgtgtggtgaa
tgtgagcaaggaccagtcggtttcgtggatccagtcactgaaatgaactatgtgagccct
gaacggctcgatgtgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACTACTGAATATCTCGACGAAG 341 45 13 Antisense
GAACGTGATCTTCCATTGCCACGTC 354 347 37 Antisense
GGAATCGATCATACTCAGACAGAGC 305 533 70 Antisense
ACTCAGACAGAGCCGATCCGTGGAT 132 99 82 Antisense
GCCGATCCGTGGATTTTTCGGAGTC 121 283 93 Antisense
TTTCGGAGTCAAGGATATGTTCGCT 247 669 108 Antisense
GGCAAACGATATCTGGTGTGTGGTG 391 533 166 Antisense
GTGAGCAAGGACCAGTCGGTTTCGT 420 481 194 Antisense
TCGGTTTCGTGGATCCAGTCACTGA 658 605 209 Antisense
GAAATGAACTATGTGAGCCCTGAAC 385 361 232 Antisense
AGCCCTGAACGGCTCGATGTGCTTC 116 83 247 Antisense
Sequence Source Affymetrix Proprietary Database