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[187470_s_at]

Description R06F6.8A /REP_DB=WormBase Gene ID /WP=CE01624 /TR=SW:Q09417 /GB=CAA86778.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 56      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 82      6grp_total > 47      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 340.5
(3)
P 		333.8
(2.6)
P 		228.6
(-3)
P 		258
(-1.4)
P 		112
B 347.6
(3)
P 		274.5
(-0.1)
P 		265.1
(-0.5)
P 		204.2
(-3)
P 		143
C 413.4
(3)
P 		243.5
(-3)
P 		328.2
(-0)
P 		255.9
(-2.6)
P 		170
avr 367.2
(3) 		283.9
(-0.9) 		274
(-1.4) 		239.4
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 307.7
(0.2)
P 		331.9
(1)
P 		201
(-3)
P 		269.1
(-0.9)
P 		265.7
(-1)
P 		399
(3)
P 		198
B 392
(3)
P 		341.3
(1.4)
P 		281.5
(-0.6)
P 		324
(0.8)
P 		206.9
(-3)
P 		380.8
(2.6)
P 		185
C 350.4
(1.2)
P 		282
(-1.7)
P 		295.8
(-1.1)
P 		258.8
(-2.7)
P 		251
(-3)
P 		394
(3)
P 		143
avr 350
(1.3) 		318.4
(0.1) 		259.4
(-2.3) 		284
(-1.3) 		241.2
(-3) 		391.3
(3) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 124
(3)
P 		72.5
(-0.6)
P 		59.8
(-1.5)
P 		37.8
(-3)
P 		86
B 110.8
(3)
P 		67.8
(-0.8)
P 		61.4
(-1.4)
P 		43.5
(-3)
P 		67
C 136.8
(3)
P 		70
(-1.3)
P 		114.4
(1.6)
P 		43.2
(-3)
P 		94
avr 123.9
(3) 		70.1
(-0.9) 		78.5
(-0.3) 		41.5
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 56.7
(-2)
P 		118.1
(3)
P 		43.8
(-3)
P 		68.2
(-1)
P 		80.2
(-0.1)
P 		97.1
(1.3)
P 		74
B 136.4
(2.5)
P 		113.6
(0.7)
P 		68.4
(-3)
P 		85.8
(-1.6)
P 		84
(-1.7)
P 		142
(3)
P 		74
C 129.9
(2.8)
P 		86.1
(-0.4)
P 		75.3
(-1.3)
P 		52
(-3)
P 		81.2
(-0.8)
P 		131.9
(3)
P 		80
avr 107.7
(1.4) 		105.9
(1.3) 		62.5
(-3) 		68.7
(-2.4) 		81.8
(-1.1) 		123.7
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187470_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2749
Sequence Type Exemplar sequence
Representative Public ID R06F6.8A NCBI
Target Description R06F6.8A /REP_DB=WormBase Gene ID /WP=CE01624 /TR=SW:Q09417 /GB=CAA86778.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063928(11), NM_063927(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063928 NCBI Caenorhabditis elegans R06F6.8a (R06F6.8) mRNA, complete cds. 11/11 A 
NM_063927 NCBI Caenorhabditis elegans R06F6.8b (R06F6.8) mRNA, complete cds. 11/11 A 
SNAP00000015434 ENSEMBL cdna:SNAP chromosome:CEL140:II:10813159:10819860:-1 11/11 None
GENEFINDER00000015444 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10813159:10820867:-1 11/11 None
R06F6.8b ENSEMBL cdna:known chromosome:CEL140:II:10812871:10819889:-1 gene:R06F6.8 11/11 None
R06F6.8a ENSEMBL cdna:known chromosome:CEL140:II:10813159:10819860:-1 gene:R06F6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10813155-10823987(-) 97.27 100.0
Public Domain and Genome References
Ensembl R06F6.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86778 Hypothetical protein R06F6.8a [Caenorhabditis elegans] ref|NP_496329.2| R06F6.8a [Caenorhabditis elegans] 0.0
blast CAA86785 Hypothetical protein R06F6.8b [Caenorhabditis elegans] ref|NP_496328.2| R06F6.8b [Caenorhabditis elegans] sp|Q09417|YRM8_CAEEL Hypothetical WD-repeat protein R06F6.8 in chromosome II 0.0
blast T23986 hypothetical protein R06F6.8b - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009771 EMBL-EBI Protein of unknown function DUF1339 1.0E-126
Pfam IPR009771 EMBL-EBI Protein of unknown function DUF1339 1.0E-126
Pfam IPR009771 EMBL-EBI Protein of unknown function DUF1339 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187470_S_AT
tcttgccggagactgctaccagaatactgatttcttagttggagaaaaatcttcgcgtgg
aaatttgcaaagtagtcatcaactggaacttcttctttctctattctcccagactgctac
tattgactggatattccttttctgtctgttaagtcgggatgaacgaaagcttcgacagga
gatcaacgtttcgatggttcgaagagccggtgagaagagcttcgccagagttcgattcgc
gtgcagtgagctctcgagatgggcggtcgagaaatgctgtggatacgtggcacttttaca
agcattcgatgctcatttggcagtggttgccgaacaagcaggatgtgctgatctcaaatt
ctcacctgataatgagaatcggaaagcttcacagaaaacgagtgctgacgatccaaaacg
cggccggagacgagcggattctggaagttctaagctaaataattcgttttcgaatccaaa
attaaatggaatgaatggaggaagacgagaacggagtcgcagcgcagatagagctcataa
atcggtgaaaagatatgatgatgtcgtttgtgctgaggatgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGCCGGAGACTGCTACCAGAAT 516 617 5217 Antisense
CTATTCTCCCAGACTGCTACTATTG 87 225 5317 Antisense
GACTGGATATTCCTTTTCTGTCTGT 115 377 5341 Antisense
GAAGAGCTTCGCCAGAGTTCGATTC 380 339 5430 Antisense
AGTTCGATTCGCGTGCAGTGAGCTC 570 63 5445 Antisense
GTGAGCTCTCGAGATGGGCGGTCGA 459 481 5462 Antisense
TGTGCTGATCTCAAATTCTCACCTG 216 557 5560 Antisense
AGTGCTGACGATCCAAAACGCGGCC 657 59 5617 Antisense
AAAACGCGGCCGGAGACGAGCGGAT 621 125 5631 Antisense
GAGTCGCAGCGCAGATAGAGCTCAT 60 401 5730 Antisense
GATGTCGTTTGTGCTGAGGATGCTC 284 409 5776 Antisense
Sequence Source Affymetrix Proprietary Database