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[187469_s_at]

Description ZK1321.3 /REP_DB=WormBase Gene ID /WP=CE01710 /TR=SW:Q09369 /GB=CAA88476.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 34      6grp_total > 60      4grp_total > 59      6grp_highest_sub > 04      6grp_cgc > 94      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2188
1 2 3 4 range
A 2394.7
(0.5)
P 		3288
(3)
P 		3261.8
(2.9)
P 		1134
(-3)
P 		2154
B 2479.4
(0.8)
P 		2895.2
(1.9)
P 		3276.2
(3)
P 		1099.7
(-3)
P 		2177
C 2276.6
(0.6)
P 		2687.2
(1.9)
P 		3016.3
(3)
P 		1138
(-3)
P 		1878
avr 2383.6
(0.7) 		2956.8
(2.3) 		3184.8
(3) 		1123.9
(-3) 		2061

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1950
1 2 3 4 5 6 range
A 2666.3
(0.2)
P 		2430.7
(-0.8)
P 		2829.5
(0.9)
P 		3298.4
(3)
P 		2269.9
(-1.5)
P 		1938.7
(-3)
P 		1360
B 2365.7
(-0.2)
P 		2569.6
(0.8)
P 		2313.3
(-0.5)
P 		2977.1
(3)
P 		2357.6
(-0.3)
P 		1846.2
(-3)
P 		1131
C 2536
(-0)
P 		2443.1
(-0.3)
P 		2969.2
(1.3)
P 		3519.8
(3)
P 		2215
(-1)
P 		1570.3
(-3)
P 		1950
avr 2522.7
(-0) 		2481.1
(-0.2) 		2704
(0.7) 		3265.1
(3) 		2280.8
(-1) 		1785.1
(-3) 		1480
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 885
1 2 3 4 range
A 871.9
(3)
P 		713.7
(1.7)
P 		852.7
(2.8)
P 		166
(-3)
P 		706
B 790.7
(3)
P 		715
(2.2)
P 		759.2
(2.7)
P 		234.3
(-3)
P 		556
C 753.6
(0.9)
P 		772.6
(1.1)
P 		1051.3
(3)
P 		191.9
(-3)
P 		859
avr 805.4
(2.3) 		733.8
(1.7) 		887.7
(3) 		197.4
(-3) 		690

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 486
1 2 3 4 5 6 range
A 491.5
(-2.7)
P 		864.5
(3)
P 		616.2
(-0.8)
P 		836.6
(2.6)
P 		685
(0.3)
P 		472
(-3)
P 		393
B 823.1
(1)
P 		855.3
(1.4)
P 		561.7
(-3)
P 		788.5
(0.4)
P 		957.8
(3)
P 		688.4
(-1.1)
P 		396
C 940
(3)
P 		745.5
(0.2)
P 		755.7
(0.3)
P 		707.8
(-0.4)
P 		716.7
(-0.2)
P 		525.7
(-3)
P 		414
avr 751.5
(1.4) 		821.8
(3) 		644.5
(-1.1) 		777.6
(2) 		786.5
(2.2) 		562
(-3) 		260
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187469_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2869
Sequence Type Exemplar sequence
Representative Public ID ZK1321.3 NCBI
Target Description ZK1321.3 /REP_DB=WormBase Gene ID /WP=CE01710 /TR=SW:Q09369 /GB=CAA88476.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063704(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063704 NCBI Caenorhabditis elegans AQuaPorin or aquaglyceroporin related family member (aqp-10) (aqp-10) mRNA, complete cds. 11/11 None
SNAP00000027164 ENSEMBL cdna:SNAP chromosome:CEL140:II:9768503:9769752:-1 11/11 None
GENEFINDER00000027167 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9768503:9769752:-1 11/11 None
ZK1321.3.1 ENSEMBL cdna:known chromosome:CEL140:II:9768249:9769760:-1 gene:ZK1321.3 11/11 None
ZK1321.3.2 ENSEMBL cdna:known chromosome:CEL140:II:9768376:9769763:-1 gene:ZK1321.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9768499-9769749(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol aqp-10
Ensembl ZK1321.3
Entrez Gene 174537 Entrez gene
SwissProt Q09369 EMBL-EBI
WormBase CE01710 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88476 Hypothetical protein ZK1321.3 [Caenorhabditis elegans] ref|NP_496105.1| AQuaPorin or aquaglyceroporin related family member (aqp-10) [Caenorhabditis elegans] sp|Q09369|YS33_CAEEL Hypothetical protein ZK1321.3 in chromosome II 1.0E-145
blast CAE57975 Hypothetical protein CBG01036 [Caenorhabditis briggsae] 1.0E-129
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496105.1 7 10-32,45-67,71-93,114-136,163-185,198-220,235-254
ZK1321.3.1 7 10-32,45-67,71-93,114-136,163-185,198-220,235-254
ZK1321.3.2 7 10-32,45-67,71-93,114-136,163-185,198-220,235-254
SNAP00000027164 7 10-32,45-67,71-93,114-136,163-185,198-220,235-254
GENEFINDER00000027167 7 10-32,45-67,71-93,114-136,163-185,198-220,235-254
Sequence
Target Sequence 
>C. ELEGANS:187469_S_AT
tcttctcctcaccgctggaaatatttttaatcgtggtgccatgacaaactgtgctccaat
ttttgagcaattcgtttttggaaaccttggttcatcaaagttcttgactattctcagtgc
tcaactcatcggagcaacttttgcatcgaaattcgcatatttgatctggaatattactgc
tccgtattcaactgctcatttggagaatgctagcaacttggaatgcattttgcattacaa
gcaaaccgccggaatcgttattggattcgagatcgttggtgcatttgttgttcgtattgt
tgttgctcaacttcttgctcgtccagcattgatcaagctcattccatttgcaatctctgc
ttatttgtcattggctctgtatgttgtcggagttcctggattgaatccaattgtggccac
tgcccgtctttatggttgccgaggaatcgacaattcttcattcttcattttgtattggtt
ctgcccagtcctgggatggttgaccggagcttacgtcgtcgggcagaaatctccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTCCTCACCGCTGGAAATATT 290 617 252 Antisense
GTGGTGCCATGACAAACTGTGCTCC 7 489 284 Antisense
TATTCTCAGTGCTCAACTCATCGGA 133 665 360 Antisense
TATTACTGCTCCGTATTCAACTGCT 581 661 423 Antisense
GCAAACCGCCGGAATCGTTATTGGA 617 315 492 Antisense
GCTCGTCCAGCATTGATCAAGCTCA 597 299 568 Antisense
ATCTCTGCTTATTTGTCATTGGCTC 404 33 604 Antisense
TTGAATCCAATTGTGGCCACTGCCC 43 703 652 Antisense
ATTTTGTATTGGTTCTGCCCAGTCC 213 15 718 Antisense
GGGATGGTTGACCGGAGCTTACGTC 699 495 744 Antisense
TACGTCGTCGGGCAGAAATCTCCAT 182 637 763 Antisense
Sequence Source Affymetrix Proprietary Database