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[187468_at]

Description T23F11.3 /REP_DB=WormBase Gene ID /WP=CE01096 /TR=SW:Q22695 /GB=CAA86458.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 25      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 50      6grp_total > 26      4grp_total > 23      6grp_highest_sub > De      6grp_cgc > 14      6grp_high1_sub > 01_02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 524
1 2 3 4 range
A 860.1
(3)
P 		363.4
(-3)
P 		472
(-1.7)
P 		764.1
(1.8)
P 		497
B 829.2
(2.4)
P 		548.2
(-0.8)
P 		360.4
(-3)
P 		884
(3)
P 		524
C 816.4
(3)
P 		579.5
(-3)
P 		582.9
(-2.9)
P 		605.5
(-2.3)
P 		237
avr 835.2
(3) 		497
(-2.6) 		471.8
(-3) 		751.2
(1.6) 		363

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 471
1 2 3 4 5 6 range
A 574.6
(2)
P 		615.4
(3)
P 		362.2
(-3)
P 		474.5
(-0.3)
P 		373.9
(-2.7)
P 		366.7
(-2.9)
P 		253
B 730.5
(3)
P 		667.5
(2.1)
P 		337.8
(-2.6)
P 		478.2
(-0.6)
P 		309
(-3)
P 		477.8
(-0.6)
P 		422
C 780.2
(3)
P 		611.8
(0.7)
P 		490.6
(-1)
P 		474.8
(-1.3)
P 		350
(-3)
P 		428.7
(-1.9)
P 		430
avr 695.1
(3) 		631.6
(1.9) 		396.9
(-2.1) 		475.8
(-0.8) 		344.3
(-3) 		424.4
(-1.6) 		351
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 313.2
(3)
P 		78.9
(-3)
P 		123.4
(-1.9)
P 		111.9
(-2.2)
P 		234
B 264.4
(3)
P 		135.4
(-1.3)
P 		83.5
(-3)
P 		188.4
(0.5)
P 		181
C 270.2
(3)
P 		166.6
(-0.7)
P 		203.2
(0.6)
P 		102.1
(-3)
P 		168
avr 282.6
(3) 		127
(-3) 		136.7
(-2.6) 		134.1
(-2.7) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 105.9
(-1.8)
P 		218.9
(3)
P 		78.9
(-3)
P 		120.3
(-1.2)
P 		112.8
(-1.5)
P 		89.3
(-2.6)
P 		140
B 254.2
(3)
P 		222.2
(1.9)
P 		82
(-3)
P 		126.7
(-1.4)
P 		125.5
(-1.5)
P 		178.2
(0.4)
P 		172
C 289.2
(3)
P 		186.7
(-0.2)
P 		124.9
(-2.1)
P 		95.5
(-3)
P 		113.3
(-2.4)
P 		143.5
(-1.5)
P 		194
avr 216.4
(3) 		209.3
(2.6) 		95.3
(-3) 		114.2
(-2.1) 		117.2
(-1.9) 		137
(-0.9) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187468_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7486
Sequence Type Exemplar sequence
Representative Public ID T23F11.3 NCBI
Target Description T23F11.3 /REP_DB=WormBase Gene ID /WP=CE01096 /TR=SW:Q22695 /GB=CAA86458.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065550(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065550 NCBI Caenorhabditis elegans T23F11.3 (T23F11.3) mRNA, complete cds. 11/11 None
SNAP00000039544 ENSEMBL cdna:SNAP chromosome:CEL140:III:4659537:4662383:1 11/11 None
GENEFINDER00000039546 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4659537:4662383:1 11/11 None
T23F11.3.2 ENSEMBL cdna:known chromosome:CEL140:III:4658702:4662609:1 gene:T23F11.3 11/11 None
T23F11.3.1 ENSEMBL cdna:known chromosome:CEL140:III:4658832:4662638:1 gene:T23F11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4659536-4662383(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cdka-1
Ensembl T23F11.3
Entrez Gene 188812 Entrez gene
SwissProt Q22695 EMBL-EBI
WormBase CE33707 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16533 cyclin-dependent protein kinase 5 activator complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16534 cyclin-dependent protein kinase 5 activator activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86458 Hypothetical protein T23F11.3 [Caenorhabditis elegans] ref|NP_497951.2| T23F11.3 [Caenorhabditis elegans] sp|Q22695|YOP3_CAEEL Hypothetical protein T23F11.3 in chromosome III 0.0
blast CAE71166 Hypothetical protein CBG18023 [Caenorhabditis briggsae] 1.0E-176
blast CAA86458 Hypothetical protein T23F11.3 [Caenorhabditis elegans] ref|NP_497951.2| T23F11.3 [Caenorhabditis elegans] sp|Q22695|YOP3_CAEEL Hypothetical protein T23F11.3 in chromosome III 1.0E-173
blast CAE71166 Hypothetical protein CBG18023 [Caenorhabditis briggsae] 1.0E-168
blast CAE71166 Hypothetical protein CBG18023 [Caenorhabditis briggsae] 1.0E-164
Protein Domains
Database ID Description E-Value
Pfam IPR004944 EMBL-EBI Cyclin-dependent kinase 5 activator 1.0E-126
Pfam IPR004944 EMBL-EBI Cyclin-dependent kinase 5 activator 4.5E-56
Pfam IPR004944 EMBL-EBI Cyclin-dependent kinase 5 activator 1.0E-126
Pfam IPR004944 EMBL-EBI Cyclin-dependent kinase 5 activator 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187468_AT
taatctggcatccaacgatctcagcgtcataggttcgccgaaacatgtgccacgaccccg
atcagtacttcgggacgacaatgcaaattgtgatatttctccaattgccgaacaggaaaa
tgttccatcagagaaaagaggcacaaagaagactataatccaggcttcaacttctgaact
tcttcgtggtcttggcattttcatctccaacaattgcgatgtttctgattttgatcccgc
ccacttggtgacgtggcttcggtcggtggatcgatcacttttacttcaaggatggcagga
tattgcatttatcaatcctgctaatctggtgtttatatttttgctggtccgtgacgtgtt
accagacgaacgtcatttaattcatactttggaagagttacacgcgtggattttaagctg
cttgtacgtttcctactcgtatatgggtaatgagatttcctatccgttgaagccgttttt
aattggaaatgatcgcaacacattttggaatcgttgcgtagcgatggtaacatcacacag
ccgtcaaatgcttcttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCTGGCATCCAACGATCTCAGC 558 635 489 Antisense
GATCTCAGCGTCATAGGTTCGCCGA 17 415 505 Antisense
CCACGACCCCGATCAGTACTTCGGG 570 269 538 Antisense
GTGATATTTCTCCAATTGCCGAACA 676 483 578 Antisense
GGCTTCAACTTCTGAACTTCTTCGT 189 537 651 Antisense
TTCTTCGTGGTCTTGGCATTTTCAT 480 687 668 Antisense
CGATGTTTCTGATTTTGATCCCGCC 660 249 705 Antisense
TTTTGCTGGTCCGTGACGTGTTACC 590 675 827 Antisense
TTAAGCTGCTTGTACGTTTCCTACT 491 683 901 Antisense
AGATTTCCTATCCGTTGAAGCCGTT 415 65 941 Antisense
ACACAGCCGTCAAATGCTTCTTCTC 408 111 1023 Antisense
Sequence Source Affymetrix Proprietary Database