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[187465_at]

Description T05H10.8 /REP_DB=WormBase Gene ID /WP=CE01645 /TR=SW:Q10004 /GB=CAA87794.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 443
1 2 3 4 range
A 96.6
(-2.1)
P 		47.6
(-3)
A 		76.8
(-2.4)
A 		363.9
(3)
P 		316
B 157.4
(-0.9)
P 		119.5
(-1.5)
A 		14.6
(-3)
A 		424
(3)
P 		409
C 123.8
(-2.4)
P 		90
(-3)
A 		104.6
(-2.8)
A 		457.6
(3)
P 		368
avr 125.9
(-2) 		85.7
(-2.7) 		65.3
(-3) 		415.2
(3) 		350

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 74.1
(-0.9)
A 		101.7
(2.5)
P 		91.3
(1.2)
A 		56.7
(-3)
M 		99.5
(2.2)
A 		105.7
(3)
A 		49
B 152.9
(3)
A 		127.5
(1.6)
P 		132.6
(1.9)
A 		40.6
(-3)
A 		86.3
(-0.6)
A 		125.8
(1.6)
P 		112
C 28
(-3)
A 		161
(3)
P 		99.4
(0.2)
A 		107.9
(0.6)
A 		54.2
(-1.8)
A 		96.9
(0.1)
P 		133
avr 85
(-1.4) 		130.1
(3) 		107.8
(0.8) 		68.4
(-3) 		80
(-1.9) 		109.5
(1) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 35.2
(0.5)
P 		10.3
(-3)
A 		20.1
(-1.6)
A 		53.3
(3)
P 		43
B 50.2
(0.2)
P 		29.5
(-1.2)
A 		3.4
(-3)
A 		90.3
(3)
P 		87
C 41
(-1.2)
P 		25.9
(-3)
A 		36.5
(-1.8)
A 		77.2
(3)
P 		51
avr 42.1
(-0.5) 		21.9
(-2.8) 		20
(-3) 		73.6
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 13.7
(-3)
A 		36.2
(3)
P 		19.9
(-1.3)
A 		14.4
(-2.8)
M 		30
(1.3)
A 		25.7
(0.2)
A 		23
B 53.2
(3)
A 		42.4
(1.5)
P 		32.2
(0)
A 		10.8
(-3)
A 		35.1
(0.4)
A 		46.9
(2.1)
P 		42
C 10.4
(-3)
A 		49.1
(3)
P 		25.3
(-0.7)
A 		21.7
(-1.2)
A 		17.5
(-1.9)
A 		32.4
(0.4)
P 		39
avr 25.8
(-0.7) 		42.6
(3) 		25.8
(-0.7) 		15.6
(-3) 		27.5
(-0.4) 		35
(1.3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3400
Sequence Type Exemplar sequence
Representative Public ID T05H10.8 NCBI
Target Description T05H10.8 /REP_DB=WormBase Gene ID /WP=CE01645 /TR=SW:Q10004 /GB=CAA87794.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063289(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063289 NCBI Caenorhabditis elegans T05H10.8 (T05H10.8) mRNA, complete cds. 11/11 None
SNAP00000019965 ENSEMBL cdna:SNAP chromosome:CEL140:II:8058990:8061385:1 11/11 None
GENEFINDER00000019973 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8059008:8061385:1 11/11 None
T05H10.8 ENSEMBL cdna:known chromosome:CEL140:II:8058990:8061385:1 gene:T05H10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8058986-8061382(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05H10.8
Entrez Gene 188154 Entrez gene
SwissProt Q10004 EMBL-EBI
WormBase CE34993 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87794 Hypothetical protein T05H10.8 [Caenorhabditis elegans] ref|NP_495690.2| T05H10.8 [Caenorhabditis elegans] sp|Q10004|YRS8_CAEEL Hypothetical protein T05H10.8 in chromosome II 0.0
blast CAE67767 Hypothetical protein CBG13342 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187465_AT
gattgtgtgctcattattgtagttcgagcattcaacaggccagaagttaatgagcatatt
ttgggattatataacagaattgatgagttaaggaaactaagatgtgatgtattcttattg
acaaagggaccaccaattggatcaagtggtggtgcatacattaagcttattggagttcct
tttcgtaaattatatgatatgaatgaggctgaagaacaattaaaaatgaatagaaagtct
gcactggaatataatggatggagaacgctttgcaaggttgtggaagcctctctcgtcgaa
ggagattcaattgttgcgaaagaagcatcaagctcagaagactcagtttcttacatttct
caaaaaggtggtactgtacttgtggataaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGTGTGCTCATTATTGTAGTTC 401 435 556 Antisense
GTAGTTCGAGCATTCAACAGGCCAG 429 455 574 Antisense
AAGGGACCACCAATTGGATCAAGTG 177 159 679 Antisense
GTGGTGGTGCATACATTAAGCTTAT 706 487 701 Antisense
TAAGCTTATTGGAGTTCCTTTTCGT 139 627 717 Antisense
GGATGGAGAACGCTTTGCAAGGTTG 23 515 811 Antisense
TGCAAGGTTGTGGAAGCCTCTCTCG 252 577 826 Antisense
GAAGCCTCTCTCGTCGAAGGAGATT 337 345 838 Antisense
GCATCAAGCTCAGAAGACTCAGTTT 519 307 880 Antisense
GACTCAGTTTCTTACATTTCTCAAA 427 373 895 Antisense
GTGGTACTGTACTTGTGGATAAATC 325 489 923 Antisense
Sequence Source Affymetrix Proprietary Database