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[187464_at]

Description ZC262.4 /REP_DB=WormBase Gene ID /WP=CE00352 /TR=SW:P34596 /GB=AAK29992.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 40.4
(-3)
A 		45.5
(-1.8)
A 		45
(-2)
A 		66.8
(3)
A 		26
B 49.6
(-0.3)
A 		94.7
(3)
A 		45.1
(-0.6)
A 		12
(-3)
A 		83
C 20.1
(-3)
A 		69.7
(2.4)
A 		33.7
(-1.5)
A 		75.6
(3)
A 		56
avr 36.7
(-3) 		70
(3) 		41.3
(-2.2) 		51.5
(-0.3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 17.7
(-1.3)
A 		8.5
(-2.4)
A 		53.1
(2.8)
A 		2.9
(-3)
A 		48.2
(2.2)
A 		54.9
(3)
A 		52
B 30.3
(-0.4)
A 		16.6
(-2.5)
A 		13.6
(-3)
A 		37
(0.6)
A 		52.1
(3)
A 		45.9
(2)
A 		39
C 37.8
(-0.1)
A 		64.3
(2.2)
A 		3.7
(-3)
A 		73.8
(3)
A 		46.4
(0.7)
A 		23.7
(-1.3)
A 		70
avr 28.6
(-1.8) 		29.8
(-1.5) 		23.5
(-3) 		37.9
(0.4) 		48.9
(3) 		41.5
(1.3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 14.7
(3)
A 		9.9
(-2.9)
A 		11.8
(-0.6)
A 		9.8
(-3)
A 		5
B 15.8
(0.8)
A 		23.4
(3)
A 		10.5
(-0.7)
A 		2.6
(-3)
A 		21
C 6.7
(-3)
A 		20
(3)
A 		11.7
(-0.7)
A 		12.7
(-0.3)
A 		13
avr 12.4
(-0.4) 		17.8
(3) 		11.3
(-1.1) 		8.4
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.3
(-1.9)
A 		3
(-2)
A 		11.6
(1.7)
A 		0.7
(-3)
A 		14.5
(3)
A 		13.4
(2.5)
A 		14
B 10.5
(-0.6)
A 		5.5
(-2.3)
A 		3.3
(-3)
A 		9.8
(-0.8)
A 		21.2
(3)
A 		17.1
(1.6)
A 		18
C 14
(1.2)
A 		19.6
(3)
A 		0.9
(-3)
A 		14.8
(1.5)
A 		15
(1.5)
A 		8
(-0.7)
A 		19
avr 9.3
(-0.9) 		9.4
(-0.9) 		5.3
(-3) 		8.4
(-1.4) 		16.9
(3) 		12.8
(0.9) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187464_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6236
Sequence Type Exemplar sequence
Representative Public ID ZC262.4 NCBI
Target Description ZC262.4 /REP_DB=WormBase Gene ID /WP=CE00352 /TR=SW:P34596 /GB=AAK29992.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066436
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000039726 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8333554:8335208:-1 11/11 None
SNAP00000039714 ENSEMBL cdna:SNAP chromosome:CEL140:III:8333578:8334439:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066436 5/11 Cross Hyb Matching Probes None
ZC262.4 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8333573-8334435(-) 99.42 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29992 Hypothetical protein ZC262.4 [Caenorhabditis elegans] ref|NP_498837.2| ZC262.4 [Caenorhabditis elegans] sp|P34596|YOD4_CAEEL Hypothetical protein ZC262.4 in chromosome III 2.0E-75
blast AAK29992 Hypothetical protein ZC262.4 [Caenorhabditis elegans] ref|NP_498837.2| ZC262.4 [Caenorhabditis elegans] sp|P34596|YOD4_CAEEL Hypothetical protein ZC262.4 in chromosome III 2.0E-74
blast XP_344326 PREDICTED: similar to 60S ribosomal protein L23a [Rattus norvegicus] 1.0E-8
Sequence
Target Sequence 
>C. ELEGANS:187464_AT
ctctcgccgacgctttgattgaggttcgtcttgatccagatcgaccaattatagaagttc
ccgagcgagtctggattggtgccatcaatggattccgaggagaagaacgaagatacgcca
tggtggatgctctgcttgcacttcctggaagtcattcgctctacatgatggcttgtcgta
tggaaaagcttcgcgaaaaaactttccaattactttctggtatttttgcagaaaagtggt
tgaagtacggcgagatgctgggtactgtcggtgagaaggattttcgaacggacatttttg
agcaaatgatgaaggatttcgttgactcaaacaaactcagtcagattgctgccaaattcc
acggatttgttgagtcagtggatgattggaatcttcttgccgaatgtcttttctcccgtg
tgagagctcttgagcataagattaatctcactgcctctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCGCCGACGCTTTGATTGAGGT 490 227 29 Antisense
GAGGTTCGTCTTGATCCAGATCGAC 457 401 49 Antisense
GAAGTTCCCGAGCGAGTCTGGATTG 426 335 82 Antisense
AGATACGCCATGGTGGATGCTCTGC 11 67 139 Antisense
TTCCTGGAAGTCATTCGCTCTACAT 18 701 170 Antisense
TCGCTCTACATGATGGCTTGTCGTA 495 595 184 Antisense
GATGCTGGGTACTGTCGGTGAGAAG 339 413 282 Antisense
GTCAGATTGCTGCCAAATTCCACGG 311 467 368 Antisense
GAATCTTCTTGCCGAATGTCTTTTC 149 329 417 Antisense
ATGTCTTTTCTCCCGTGTGAGAGCT 299 49 432 Antisense
ATAAGATTAATCTCACTGCCTCTGC 431 25 464 Antisense
Sequence Source Affymetrix Proprietary Database