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[187462_at]

Description ZK1307.1 /REP_DB=WormBase Gene ID /WP=CE01690 /TR=SW:Q09359 /GB=CAA87437.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 25      6grp_total > 41      4grp_total > 58      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8911
1 2 3 4 range
A 3039.4
(-1.1)
P 		9160.8
(3)
P 		8438.1
(2.5)
P 		258.7
(-3)
P 		8902
B 3390.7
(-0.9)
P 		7982.9
(2.3)
P 		9075.8
(3)
P 		249.4
(-3)
P 		8826
C 2811.1
(-1)
P 		7683.5
(2.9)
P 		7784.2
(3)
P 		321.1
(-3)
P 		7463
avr 3080.4
(-0.9) 		8275.7
(2.9) 		8432.7
(3) 		276.4
(-3) 		8156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5988
1 2 3 4 5 6 range
A 4976.2
(1)
P 		4441.7
(0.4)
P 		6715.6
(3)
P 		5636.6
(1.8)
P 		3010.6
(-1.2)
P 		1399
(-3)
P 		5317
B 4610.3
(0.2)
P 		4770.2
(0.4)
P 		7386.7
(3)
P 		5295.1
(0.9)
P 		3277.3
(-1.2)
P 		1455.5
(-3)
P 		5931
C 3693.2
(-0.3)
P 		4588.7
(0.9)
P 		6186.2
(3)
P 		5546.1
(2.2)
P 		2849
(-1.4)
P 		1637.5
(-3)
P 		4549
avr 4426.6
(0.3) 		4600.2
(0.5) 		6762.8
(3) 		5492.6
(1.6) 		3045.6
(-1.2) 		1497.3
(-3) 		5266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2675
1 2 3 4 range
A 1106.7
(-0)
P 		1988.6
(2.4)
P 		2205.9
(3)
P 		37.9
(-3)
P 		2168
B 1081.3
(0)
P 		1971.6
(2.6)
P 		2103.1
(3)
P 		53.1
(-3)
P 		2050
C 930.6
(-1)
P 		2209
(1.9)
P 		2713.1
(3)
P 		54.1
(-3)
P 		2659
avr 1039.5
(-0.4) 		2056.4
(2.3) 		2340.7
(3) 		48.4
(-3) 		2292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1453
1 2 3 4 5 6 range
A 917.3
(-0.2)
P 		1579.7
(3)
P 		1462.5
(2.4)
P 		1429.6
(2.3)
P 		908.5
(-0.3)
P 		340.6
(-3)
P 		1239
B 1604.2
(2.1)
P 		1587.8
(2)
P 		1793.7
(3)
P 		1402.5
(1.1)
P 		1331.5
(0.8)
P 		542.7
(-3)
P 		1251
C 1368.9
(1.8)
P 		1400.1
(2)
P 		1574.5
(3)
P 		1115.3
(0.3)
P 		921.9
(-0.8)
P 		548.2
(-3)
P 		1026
avr 1296.8
(1.3) 		1522.5
(2.5) 		1610.2
(3) 		1315.8
(1.4) 		1054
(0.1) 		477.2
(-3) 		1133
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187462_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3440
Sequence Type Exemplar sequence
Representative Public ID ZK1307.1 NCBI
Target Description ZK1307.1 /REP_DB=WormBase Gene ID /WP=CE01690 /TR=SW:Q09359 /GB=CAA87437.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027339(11), NM_001027338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027339 NCBI Caenorhabditis elegans ZK1307.1b (ZK1307.1) mRNA, complete cds. 11/11 None
NM_001027338 NCBI Caenorhabditis elegans ZK1307.1a (ZK1307.1) mRNA, complete cds. 11/11 None
SNAP00000021428 ENSEMBL cdna:SNAP chromosome:CEL140:II:9654342:9655320:-1 11/11 None
GENEFINDER00000021434 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9653076:9655320:-1 11/11 None
ZK1307.1b.2 ENSEMBL cdna:known chromosome:CEL140:II:9654256:9655492:-1 gene:ZK1307.1 11/11 None
ZK1307.1b.1 ENSEMBL cdna:known chromosome:CEL140:II:9654256:9655329:-1 gene:ZK1307.1 11/11 None
ZK1307.1a ENSEMBL cdna:known chromosome:CEL140:II:9654279:9655509:-1 gene:ZK1307.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9654338-9655439(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1307.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87437 Hypothetical protein ZK1307.1a [Caenorhabditis elegans] ref|NP_001022509.1| ZK1307.1a [Caenorhabditis elegans] sp|Q09359|YS11_CAEEL Hypothetical protein ZK1307.1 in chromosome II 1.0E-150
blast CAA87437 Hypothetical protein ZK1307.1a [Caenorhabditis elegans] ref|NP_001022509.1| ZK1307.1a [Caenorhabditis elegans] sp|Q09359|YS11_CAEEL Hypothetical protein ZK1307.1 in chromosome II 1.0E-147
blast CAA87437 Hypothetical protein ZK1307.1a [Caenorhabditis elegans] ref|NP_001022509.1| ZK1307.1a [Caenorhabditis elegans] sp|Q09359|YS11_CAEEL Hypothetical protein ZK1307.1 in chromosome II 1.0E-136
blast CAE57999 Hypothetical protein CBG01062 [Caenorhabditis briggsae] 1.0E-134
blast CAE57999 Hypothetical protein CBG01062 [Caenorhabditis briggsae] 1.0E-123
blast CAE48834 Hypothetical protein ZK1307.1b [Caenorhabditis elegans] ref|NP_001022510.1| ZK1307.1b [Caenorhabditis elegans] 4.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR003198 EMBL-EBI Amidinotransferase 3.2E-38
Pfam IPR003198 EMBL-EBI Amidinotransferase 1.9E-94
Pfam IPR003198 EMBL-EBI Amidinotransferase 1.9E-94
Pfam IPR003198 EMBL-EBI Amidinotransferase 1.4E-84
Sequence
Target Sequence 
>C. ELEGANS:187462_AT
agaagcggtgagcaaccactctacttggaatggttcaagaagaacaatatcaaaactatt
ggggaaggatatgaagagatcttcgaaggcggaggagatgctgtattttctgaccgtaaa
actctttgggctggttatggagagcgtagttcaaagtctgtctacgagaaaatcaaggca
ctcgggacttttgatattgttctctgtgatatgattcttccaaacttttatcacttggac
acttgttttgctccagttgatgagaccagcgccctctactacccacctgcattctctgag
gcaaccaataaggagatcctccgtcgtcttccaaactcgattgctgtctccgaagctgaa
gcaaatgctttcgtgtgcaacgccatcactattcgtgataccgtaatctccccaatcggt
gtctctcaagcaaccaaggattatctgtcggctcgtggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCGGTGAGCAACCACTCTACT 122 75 313 Antisense
GGAGATGCTGTATTTTCTGACCGTA 213 517 406 Antisense
GACACTTGTTTTGCTCCAGTTGATG 375 367 550 Antisense
ACCTGCATTCTCTGAGGCAACCAAT 661 87 597 Antisense
AATAAGGAGATCCTCCGTCGTCTTC 424 171 619 Antisense
CGTCGTCTTCCAAACTCGATTGCTG 675 245 634 Antisense
CTCGATTGCTGTCTCCGAAGCTGAA 166 233 648 Antisense
TGTGCAACGCCATCACTATTCGTGA 241 555 686 Antisense
TGATACCGTAATCTCCCCAATCGGT 325 559 708 Antisense
CCAATCGGTGTCTCTCAAGCAACCA 462 273 724 Antisense
AAGGATTATCTGTCGGCTCGTGGAA 594 159 748 Antisense
Sequence Source Affymetrix Proprietary Database