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[187460_at]

Description ZK381.2 /REP_DB=WormBase Gene ID /WP=CE07626 /TR=SW:Q23469 /GB=AAG00054.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      4grp_high_8_8 > 38      6grp_total > 35      4grp_total > 41      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 59.8
(-3)
P 		141.8
(2.9)
P 		143.1
(3)
P 		140.7
(2.8)
P 		83
B 28
(-3)
A 		120.8
(3)
P 		105.9
(2)
P 		74.9
(0)
P 		93
C 35.8
(-3)
P 		100.2
(1.5)
P 		121.5
(3)
P 		54.4
(-1.7)
P 		86
avr 41.2
(-3) 		120.9
(2.8) 		123.5
(3) 		90
(0.6) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 76.8
(3)
A 		39.3
(-3)
A 		57.6
(-0.1)
P 		72.4
(2.3)
P 		71.6
(2.2)
P 		72.1
(2.2)
A 		38
B 53.7
(0.5)
P 		63.4
(2.6)
P 		64.2
(2.8)
P 		65.1
(3)
P 		37.5
(-3)
M 		37.5
(-3)
A 		28
C 61.1
(-1.1)
P 		101.9
(3)
P 		66.5
(-0.6)
P 		42.4
(-3)
A 		62.4
(-1)
M 		70.9
(-0.1)
P 		60
avr 63.9
(0.7) 		68.2
(3) 		62.8
(0.1) 		60
(-1.5) 		57.2
(-3) 		60.2
(-1.4) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 21.8
(-2.6)
P 		30.8
(0.6)
P 		37.4
(3)
P 		20.6
(-3)
P 		17
B 8.9
(-3)
A 		29.8
(3)
P 		24.5
(1.5)
P 		16
(-1)
P 		21
C 11.8
(-2.5)
P 		28.8
(0.6)
P 		42.3
(3)
P 		9.2
(-3)
P 		33
avr 14.2
(-3) 		29.8
(1.6) 		34.7
(3) 		15.3
(-2.7) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 14.2
(-1.9)
A 		14
(-2.1)
A 		12.6
(-3)
P 		18.4
(0.9)
P 		21.6
(3)
P 		17.6
(0.3)
A 		9
B 18.7
(1)
P 		21.1
(3)
P 		15.6
(-1.6)
P 		17.2
(-0.3)
P 		15.2
(-2)
M 		14
(-3)
A 		7
C 22.7
(0.8)
P 		31.1
(3)
P 		16.9
(-0.8)
P 		8.5
(-3)
A 		20.2
(0.1)
M 		23.7
(1)
P 		23
avr 18.5
(0.1) 		22.1
(3) 		15
(-2.8) 		14.7
(-3) 		19
(0.5) 		18.4
(-0) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187460_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8629
Sequence Type Exemplar sequence
Representative Public ID ZK381.2 NCBI
Target Description ZK381.2 /REP_DB=WormBase Gene ID /WP=CE07626 /TR=SW:Q23469 /GB=AAG00054.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068674(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068674 NCBI Caenorhabditis elegans ZK381.2 (ZK381.2) mRNA, complete cds. 11/11 None
SNAP00000022638 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6965940:6967567:1 11/11 None
GENEFINDER00000022645 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6965534:6967854:1 11/11 None
ZK381.2 ENSEMBL cdna:known chromosome:CEL140:IV:6965534:6967567:1 gene:ZK381.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6965539-6967573(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK381.2
Entrez Gene 191306 Entrez gene
SwissProt Q23469 EMBL-EBI
WormBase CE07626 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00054 Hypothetical protein ZK381.2 [Caenorhabditis elegans] ref|NP_501075.1| ZK381.2 [Caenorhabditis elegans] sp|Q23469|YPTJ_CAEEL Hypothetical protein ZK381.2 in chromosome IV 0.0
blast CAB05705 Hypothetical protein C49A1.5 [Caenorhabditis elegans] ref|NP_493485.1| C49A1.5 [Caenorhabditis elegans] 0.0
blast CAE61770 Hypothetical protein CBG05730 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501075.1 1 5-27
ZK381.2 1 5-27
GENEFINDER00000022645 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:187460_AT
gaaggagggagcatgagtttgtcaaagcatcaacccttaccgagttcagcttcacagaac
ttgtacaaagtcttcgttcttctcaaactgtgaaacgtggtaaagtcgttgtgagacccg
aagcatataattcaacgtggattcacaatagcaaacatgtcagttttgaaacgagtgtac
aagtgaaaagtccaacattagtacatgttcaacttccagttgataaaaatgggaaaagga
atgattcaagggatttgtggaaaataaagtttggaccattaaatgagacaattcgagaag
atgatattagagcaattgaggatgatataaacagaataaaaaatttggcagttatctctt
caataggtcccttccttccaagctcagatttctacttgccaatcgtttttaaatgttatt
ttgattctttttacaaggacacatttgtgacgaaaattggtgttagaagatgcccaaatg
cagatatttgtgatctaccacaacgagaagattataaatgtattcattcggatgctcaat
actattctggacccgatatgcaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGAGGGAGCATGAGTTTGTCAA 357 333 899 Antisense
TTGTCAAAGCATCAACCCTTACCGA 658 699 917 Antisense
CCTTACCGAGTTCAGCTTCACAGAA 601 267 933 Antisense
TGTACAAAGTCTTCGTTCTTCTCAA 165 559 960 Antisense
GTCTTCGTTCTTCTCAAACTGTGAA 627 467 968 Antisense
AAGTCGTTGTGAGACCCGAAGCATA 207 137 1001 Antisense
ATTAGTACATGTTCAACTTCCAGTT 498 13 1095 Antisense
AAAAAATTTGGCAGTTATCTCTTCA 685 127 1236 Antisense
TTCCTTCCAAGCTCAGATTTCTACT 314 699 1270 Antisense
ATTCGGATGCTCAATACTATTCTGG 643 9 1424 Antisense
ACTATTCTGGACCCGATATGCAACC 439 101 1439 Antisense
Sequence Source Affymetrix Proprietary Database