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[187459_at]

Description B0416.1 /REP_DB=WormBase Gene ID /WP=CE19663 /TR=SW:Q11069 /GB=AAG38884.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      6grp_total > 12      4grp_total > 52      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 457
1 2 3 4 range
A 432.6
(3)
P 		391
(2.3)
P 		284
(0.5)
P 		70.3
(-3)
A 		362
B 479.5
(3)
P 		418.8
(2.2)
P 		325.4
(1)
P 		22.1
(-3)
A 		457
C 446.4
(2.5)
P 		477.6
(3)
P 		346.8
(0.8)
P 		117
(-3)
A 		361
avr 452.8
(3) 		429.1
(2.6) 		318.7
(0.9) 		69.8
(-3) 		383

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 345
1 2 3 4 5 6 range
A 383.2
(0.2)
P 		528.6
(3)
P 		300.5
(-1.3)
P 		341.7
(-0.6)
P 		322.2
(-0.9)
P 		212.9
(-3)
A 		316
B 358.5
(0.5)
P 		471
(3)
P 		355.5
(0.4)
P 		389.5
(1.2)
P 		205.9
(-3)
P 		220.7
(-2.7)
P 		265
C 339
(-0)
P 		497.9
(3)
P 		467.2
(2.4)
P 		409
(1.3)
P 		191.5
(-2.9)
M 		183.7
(-3)
P 		314
avr 360.2
(0.2) 		499.2
(3) 		374.4
(0.4) 		380.1
(0.6) 		239.9
(-2.3) 		205.8
(-3) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 157.5
(3)
P 		84.9
(0)
P 		74.2
(-0.4)
P 		10.3
(-3)
A 		147
B 152.9
(3)
P 		103.4
(1)
P 		75.4
(-0.1)
P 		4.7
(-3)
A 		148
C 147.8
(3)
P 		137.3
(2.5)
P 		120.9
(1.7)
P 		19.7
(-3)
A 		128
avr 152.7
(3) 		108.5
(1.1) 		90.2
(0.3) 		11.6
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 70.6
(-2.2)
P 		188
(3)
P 		65.4
(-2.4)
P 		86.7
(-1.5)
P 		97.2
(-1)
P 		51.8
(-3)
A 		136
B 124.7
(0.4)
P 		156.8
(3)
P 		86.3
(-2.7)
P 		103.2
(-1.3)
P 		83.6
(-2.9)
P 		82.3
(-3)
P 		75
C 125.7
(1.3)
P 		151.9
(3)
P 		118.9
(0.8)
P 		82.2
(-1.6)
P 		62
(-3)
M 		61.5
(-3)
P 		90
avr 107
(-0.5) 		165.6
(3) 		90.2
(-1.5) 		90.7
(-1.5) 		80.9
(-2.1) 		65.2
(-3) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187459_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16421
Sequence Type Exemplar sequence
Representative Public ID B0416.1 NCBI
Target Description B0416.1 /REP_DB=WormBase Gene ID /WP=CE19663 /TR=SW:Q11069 /GB=AAG38884.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077168 NCBI Caenorhabditis elegans B0416.1 (B0416.1) mRNA, complete cds. 11/11 None
SNAP00000014765 ENSEMBL cdna:SNAP chromosome:CEL140:X:9303736:9310168:1 10/11 None
GENEFINDER00000014767 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9304155:9310168:1 11/11 None
B0416.1 ENSEMBL cdna:known chromosome:CEL140:X:9303654:9310361:1 gene:B0416.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9303711-9310168(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0416.1
Entrez Gene 181161 Entrez gene
SwissProt Q11069 EMBL-EBI
WormBase CE19663 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG38884 Hypothetical protein B0416.1 [Caenorhabditis elegans] ref|NP_509569.1| B0416.1 [Caenorhabditis elegans] sp|Q11069|YT41_CAEEL Hypothetical protein B0416.1 in chromosome X 0.0
blast CAE69839 Hypothetical protein CBG16163 [Caenorhabditis briggsae] 0.0
blast NP_508221 T13G4.3 [Caenorhabditis elegans] 1.0E-171
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509569.1 8 191-213,276-298,369-391,406-428,441-463,665-687,714-736,780-802
B0416.1 8 191-213,276-298,369-391,406-428,441-463,665-687,714-736,780-802
SNAP00000014765 9 183-205,268-290,361-383,398-420,433-455,657-679,706-728,772-794,1026-1043
GENEFINDER00000014767 8 144-166,229-251,322-344,359-381,394-416,618-640,667-689,733-755
Sequence
Target Sequence 
>C. ELEGANS:187459_AT
cacttacatcacacctttgcgaattgagaaaaagagctctgctagttcatcaagtagctc
gcatcagccatcatcttcaattgagaaacaagctgcaaggaggcttctgcagccaattag
tacaacacacaatattcgatatggagttgctacggtagaaaactcttcccaagatccaac
tcgtcctccatcaacagacgattcacttggcgatcctgcacttcatgaaccactatgggc
aaatctgaatcctcacagcagctacacctctgcaatgatgtctccaattatgaatgaggt
tatgtcaaatgatgagacaactgatgacgagaaagggcgtttgattcctgatagaccacc
aatcccacattcaccaagagagttgaaaagactaaaacgtgaaaaagatcagcaatcaga
gagcggaagtaagccgagtactcctcgaccacctcggtttaggatatctatgtcacctcc
acga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTTACATCACACCTTTGCGAATT 148 197 3039 Antisense
AAGAGCTCTGCTAGTTCATCAAGTA 63 155 3070 Antisense
CATCAAGTAGCTCGCATCAGCCATC 161 213 3086 Antisense
GAAAACTCTTCCCAAGATCCAACTC 633 353 3196 Antisense
AACAGACGATTCACTTGGCGATCCT 191 135 3231 Antisense
ATCCTGCACTTCATGAACCACTATG 332 39 3251 Antisense
TACACCTCTGCAATGATGTCTCCAA 119 643 3301 Antisense
GGGCGTTTGATTCCTGATAGACCAC 373 493 3373 Antisense
GAAGTAAGCCGAGTACTCCTCGACC 86 335 3464 Antisense
TCCTCGACCACCTCGGTTTAGGATA 235 385 3480 Antisense
TAGGATATCTATGTCACCTCCACGA 33 655 3498 Antisense
Sequence Source Affymetrix Proprietary Database