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[187457_at]

Description B0416.4 /REP_DB=WormBase Gene ID /WP=CE02434 /TR=SW:Q11072 /GB=AAG38881.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 25.3
(-0.5)
A 		19.7
(-1.4)
A 		9.2
(-3)
A 		48.2
(3)
A 		39
B 1.9
(-3)
A 		10.3
(3)
A 		4.9
(-0.9)
A 		5.1
(-0.7)
A 		8
C 1.3
(-3)
A 		39.6
(0.6)
A 		19.4
(-1.3)
A 		64.6
(3)
P 		63
avr 9.5
(-3) 		23.2
(-0.2) 		11.2
(-2.7) 		39.3
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 4.6
(-3)
A 		4.3
(-3)
A 		29.9
(0.1)
A 		6.5
(-2.7)
A 		26.8
(-0.3)
A 		53.5
(3)
P 		49
B 1.5
(-3)
A 		6.8
(-2.5)
A 		2
(-3)
A 		3
(-2.9)
A 		23.8
(-0.9)
P 		66.3
(3)
P 		65
C 11.1
(-2.8)
A 		10.8
(-2.8)
A 		6.6
(-3)
A 		12.9
(-2.7)
A 		11.8
(-2.7)
A 		127.7
(3)
P 		121
avr 5.7
(-3) 		7.3
(-2.9) 		12.8
(-2.4) 		7.5
(-2.9) 		20.8
(-1.8) 		82.5
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9.2
(3)
A 		4.3
(-1.3)
A 		2.4
(-3)
A 		7.1
(1.1)
A 		7
B 0.6
(-3)
A 		2.6
(3)
A 		1.1
(-1.5)
A 		1.1
(-1.5)
A 		2
C 0.4
(-3)
A 		11.4
(3)
A 		6.8
(0.5)
A 		10.9
(2.7)
P 		11
avr 3.4
(-3) 		6.1
(2.4) 		3.4
(-3) 		6.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.5
(-2.7)
A 		6.5
(-0.2)
A 		1.7
(-2.6)
A 		8.1
(0.6)
A 		13
(3)
P 		12
B 0.5
(-3)
A 		2.3
(-2.6)
A 		0.5
(-3)
A 		0.8
(-2.9)
A 		9.7
(-0.7)
P 		24.7
(3)
P 		24
C 4.1
(-2.6)
A 		3.3
(-2.8)
A 		1.7
(-3)
A 		2.6
(-2.9)
A 		3.8
(-2.7)
A 		42.8
(3)
P 		41
avr 1.8
(-3) 		2.4
(-2.8) 		2.9
(-2.7) 		1.7
(-3) 		7.2
(-1.7) 		26.8
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187457_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16851
Sequence Type Exemplar sequence
Representative Public ID B0416.4 NCBI
Target Description B0416.4 /REP_DB=WormBase Gene ID /WP=CE02434 /TR=SW:Q11072 /GB=AAG38881.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077163(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077163 NCBI Caenorhabditis elegans B0416.4 (B0416.4) mRNA, complete cds. 11/11 None
GENEFINDER00000036830 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9278892:9279773:1 11/11 None
B0416.4 ENSEMBL cdna:known chromosome:CEL140:X:9278892:9279773:1 gene:B0416.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036822 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9278891-9279773(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0416.4
Entrez Gene 181985 Entrez gene
SwissProt Q11072 EMBL-EBI
WormBase CE02434 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG38881 Hypothetical protein B0416.4 [Caenorhabditis elegans] ref|NP_509564.1| B0416.4 [Caenorhabditis elegans] sp|Q11072|YT44_CAEEL Hypothetical RING finger protein B0416.4 in chromosome X 1.0E-120
blast CAE73383 Hypothetical protein CBG20823 [Caenorhabditis briggsae] 2.0E-16
blast CAB04460 Hypothetical protein F53F8.3 [Caenorhabditis elegans] ref|NP_507996.1| F53F8.3 [Caenorhabditis elegans] 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.1E-5
Sequence
Target Sequence 
>C. ELEGANS:187457_AT
aacggtgcgtcgagaatggatgcggaatagtagacaagcaacaaccaatattaacatcgc
tcaaattgagtctttgaaactgcaattggaagaaggggaaaaagatatagcagaagctga
aaaacaagcggaaccgacaacaccgcaacaagaagctgagttgagtgagacgtttaagca
aatggtgcgggatcgcatgaaagtgaaggatgtcgacgagaaattgcttcaacagtacat
gaaaaaggaaaatgtggaatttgagtggagaagctgcttcatttgcactatggagtacag
ccgtactgacaagaacctgcatccaattattcttaattgtggtcacaatctatgtaggag
ctgcatcaacaaactcactggcaacggaatcgtcaagtgtccatttgaccgtttggatac
gcgcgtcagagtgactggtctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGTGCGTCGAGAATGGATGCGG 486 141 198 Antisense
GCAACAACCAATATTAACATCGCTC 25 319 235 Antisense
GAACCGACAACACCGCAACAAGAAG 642 345 328 Antisense
AAGCTGCTTCATTTGCACTATGGAG 344 149 468 Antisense
GCCGTACTGACAAGAACCTGCATCC 188 285 497 Antisense
GAACCTGCATCCAATTATTCTTAAT 363 345 510 Antisense
GGAGCTGCATCAACAAACTCACTGG 519 521 554 Antisense
CAAACTCACTGGCAACGGAATCGTC 440 191 567 Antisense
AACGGAATCGTCAAGTGTCCATTTG 665 143 580 Antisense
ATTTGACCGTTTGGATACGCGCGTC 162 15 600 Antisense
TACGCGCGTCAGAGTGACTGGTCTT 348 649 615 Antisense
Sequence Source Affymetrix Proprietary Database