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[187456_s_at]

Description K02F3.2 /REP_DB=WormBase Gene ID /WP=CE01348 /TR=SW:Q21153 /GB=AAK21421.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 126.9
(2)
A 		18.4
(-3)
A 		80
(-0.2)
A 		148.7
(3)
A 		130
B 120
(0.4)
A 		111.2
(0)
A 		35.6
(-3)
A 		185.8
(3)
P 		150
C 119
(-1)
P 		84
(-2.8)
A 		79
(-3)
A 		200.2
(3)
P 		121
avr 122
(0) 		71.2
(-2.7) 		64.9
(-3) 		178.2
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 103.8
(0.4)
A 		120.3
(2.3)
P 		73
(-3)
A 		95.8
(-0.5)
A 		77.4
(-2.5)
A 		126.9
(3)
M 		54
B 93.8
(3)
A 		82.7
(1)
A 		89.1
(2.2)
M 		83.9
(1.2)
A 		79.8
(0.5)
A 		59.9
(-3)
A 		34
C 106.8
(-1)
A 		90.6
(-2.1)
A 		162.9
(3)
P 		103.9
(-1.2)
A 		99.9
(-1.5)
A 		78.5
(-3)
A 		84
avr 101.5
(1.2) 		97.9
(0.2) 		108.3
(3) 		94.5
(-0.7) 		85.7
(-3) 		88.4
(-2.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 46.2
(3)
A 		4
(-3)
A 		20.9
(-0.6)
A 		21.8
(-0.5)
A 		42
B 38.3
(2.8)
A 		27.5
(0.7)
A 		8.3
(-3)
A 		39.6
(3)
P 		31
C 39.4
(3)
P 		24.2
(-3)
A 		27.5
(-1.7)
A 		33.8
(0.8)
P 		15
avr 41.3
(3) 		18.6
(-3) 		18.9
(-2.9) 		31.7
(0.5) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 19.1
(-2.3)
A 		42.8
(3)
P 		15.9
(-3)
A 		24.3
(-1.1)
A 		23.3
(-1.3)
A 		30.9
(0.3)
M 		27
B 32.7
(3)
A 		27.5
(0.2)
A 		21.6
(-3)
M 		22.2
(-2.7)
A 		32.4
(2.8)
A 		22.3
(-2.6)
A 		11
C 39.6
(2.4)
A 		27.6
(-1)
A 		41.5
(3)
P 		20.9
(-3)
A 		32.3
(0.3)
A 		26.3
(-1.4)
A 		21
avr 30.5
(1.8) 		32.6
(3) 		26.3
(-0.7) 		22.5
(-3) 		29.3
(1) 		26.5
(-0.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187456_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8232
Sequence Type Exemplar sequence
Representative Public ID K02F3.2 NCBI
Target Description K02F3.2 /REP_DB=WormBase Gene ID /WP=CE01348 /TR=SW:Q21153 /GB=AAK21421.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064873(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064873 NCBI Caenorhabditis elegans K02F3.2 (K02F3.2) mRNA, complete cds. 11/11 None
SNAP00000008340 ENSEMBL cdna:SNAP chromosome:CEL140:III:845852:850264:1 11/11 None
GENEFINDER00000008353 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:845852:850264:1 11/11 None
K02F3.2 ENSEMBL cdna:known chromosome:CEL140:III:845838:850264:1 gene:K02F3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:845851-850264(+) 99.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02F3.2
Entrez Gene 175242 Entrez gene
SwissProt Q21153 EMBL-EBI
WormBase CE01348 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589986_S_AT similar to solute carrier family 25 (mitochondrial carrier, Aralar), member 12 cfa
CANINE_2:CFA.21270.1.S1_S_AT similar to solute carrier family 25 (mitochondrial carrier, Aralar), member 12 cfa
CANINE_2:CFA.650.1.S1_AT similar to solute carrier family 25 (mitochondrial carrier, Aralar), member 12 cfa
CANINE_2:CFAAFFX.19921.1.S1_S_AT similar to solute carrier family 25 (mitochondrial carrier, Aralar), member 12 cfa
DROSOPHILA_2:1641111_S_AT dm
DROSGENOME1:154731_AT dm
HG-U133A:203340_S_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HG-U133_PLUS_2:203340_S_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HG-FOCUS:203340_S_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HG-U133A_2:203340_S_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HU35KSUBA:RC_AA477641_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HU35KSUBC:RC_N98341_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HU35KSUBC:RC_C13976_S_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
U133_X3P:G4507006_3P_A_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
U133_X3P:HS.179866.0.S2_3P_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HG-U133A_2:203339_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HG-U133_PLUS_2:203339_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HG-U133A:203339_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HG-U95AV2:33256_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HG-U95C:55373_R_AT Solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HG-U95E:80142_AT Solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HG-U95D:90255_AT Solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
HU35KSUBB:RC_H16761_AT Solute carrier family 25 (mitochondrial carrier, Aralar), member 12 hs
MG-U74BV2:110361_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 mm
MOE430B:1428440_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 mm
MOUSE430_2:1428440_AT solute carrier family 25 (mitochondrial carrier, Aralar), member 12 mm
MOE430B:1444489_AT Solute carrier family 25 (mitochondrial carrier, Aralar), member 12, mRNA (cDNA clone MGC:67718 IMAGE:6311836) mm
MOUSE430_2:1444489_AT Solute carrier family 25 (mitochondrial carrier, Aralar), member 12, mRNA (cDNA clone MGC:67718 IMAGE:6311836) mm
MOE430B:1459379_AT Solute carrier family 25 (mitochondrial carrier, Aralar), member 12, mRNA (cDNA clone MGC:67718 IMAGE:6311836) mm
MOUSE430_2:1459379_AT Solute carrier family 25 (mitochondrial carrier, Aralar), member 12, mRNA (cDNA clone MGC:67718 IMAGE:6311836) mm
MU19KSUBA:TC20384_AT Solute carrier family 25 (mitochondrial carrier, Aralar), member 12, mRNA (cDNA clone MGC:67718 IMAGE:6311836) mm
MU19KSUBA:TC20384_G_AT Solute carrier family 25 (mitochondrial carrier, Aralar), member 12, mRNA (cDNA clone MGC:67718 IMAGE:6311836) mm
MU19KSUBB:TC34046_AT Solute carrier family 25 (mitochondrial carrier, Aralar), member 12, mRNA (cDNA clone MGC:67718 IMAGE:6311836) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21421 Hypothetical protein K02F3.2 [Caenorhabditis elegans] ref|NP_497274.1| K02F3.2 [Caenorhabditis elegans] sp|Q21153|CMC1_CAEEL Probable calcium-binding mitochondrial carrier K02F3.2 0.0
blast CAE56473 Hypothetical protein CBG24187 [Caenorhabditis briggsae] 0.0
blast XP_392496 PREDICTED: similar to ENSANGP00000018542, partial [Apis mellifera] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.2E-35
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 8.7E-23
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.1E-34
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.028
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 9.4E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.6E-5
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.2E-35
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 8.7E-23
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.1E-34
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 4.2E-35
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 8.7E-23
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 1.1E-34
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.6E-5
Sequence
Target Sequence 
>C. ELEGANS:187456_S_AT
actctacaaaggatcccgtgcgtgcttccttcgggatattccgttctcagcaatctattt
cccggcatacgctcacgcaaaactcgcatctgctgatgaagatggaatgaactcaccggg
aacactttttgcttccgcgtttattgctggagtgcctgccgctggtttagtaacacctgc
cgatgttatcaagactaggcttcaagtagctgcacgagctggacagacgacgtataatgg
agtcattgattgcgctcggaagctgatcaaagaagagggtccaatgtcactatggaaggg
tacagctgcacgtgtgtgccgttcaagtcctcaattcgcagttactcttctcacttacga
ggttctccagcgcctcttctacgtcgatttcgccggatcccggccgactggttccgagct
tgcgacgacgaagacaattcaagacgagtcgtcaacgaatccggatcacgttggtggata
caagctggcggcagctacattctccggaatcgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCTACAAAGGATCCCGTGCGTGC 587 99 1563 Antisense
CGTGCTTCCTTCGGGATATTCCGTT 388 245 1583 Antisense
GATATTCCGTTCTCAGCAATCTATT 215 427 1597 Antisense
CTCACGCAAAACTCGCATCTGCTGA 3 229 1634 Antisense
GAACTCACCGGGAACACTTTTTGCT 232 349 1671 Antisense
TTTGCTTCCGCGTTTATTGCTGGAG 260 667 1690 Antisense
GCCGCTGGTTTAGTAACACCTGCCG 4 287 1720 Antisense
TACAGCTGCACGTGTGTGCCGTTCA 480 643 1863 Antisense
GTTCAAGTCCTCAATTCGCAGTTAC 686 443 1883 Antisense
ACTCTTCTCACTTACGAGGTTCTCC 28 101 1906 Antisense
GCAGCTACATTCTCCGGAATCGAAC 102 279 2053 Antisense
Sequence Source Affymetrix Proprietary Database