[Home] | [Total List]

[187455_at]

Description K02A2.5 /REP_DB=WormBase Gene ID /WP=CE01993 /TR=SW:Q09401 /GB=AAC46704.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 58      4grp_high_8_8 > 08      6grp_total > 69      4grp_total > 31      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 242.2
(3)
P 		128.4
(-3)
A 		146.3
(-2.1)
A 		130.1
(-2.9)
P 		114
B 181.1
(-0.9)
P 		124.7
(-3)
P 		208.9
(0.1)
P 		289.2
(3)
P 		165
C 283
(3)
P 		128.4
(-2.4)
P 		112.2
(-3)
P 		123.1
(-2.6)
P 		171
avr 235.4
(3) 		127.2
(-3) 		155.8
(-1.4) 		180.8
(-0) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 107
(0.1)
A 		97.9
(-0.6)
P 		98.5
(-0.6)
P 		66.7
(-3)
A 		139.6
(2.5)
P 		145.7
(3)
P 		79
B 182.2
(3)
P 		139.5
(-0.8)
P 		128.3
(-1.8)
P 		131.3
(-1.5)
P 		114.6
(-3)
P 		141.8
(-0.6)
P 		68
C 109.5
(-2)
P 		152.5
(1)
P 		122.9
(-1.1)
P 		95.9
(-3)
P 		100.8
(-2.7)
P 		180.7
(3)
P 		85
avr 132.9
(0.6) 		130
(0.3) 		116.6
(-1.1) 		98
(-3) 		118.3
(-0.9) 		156.1
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 88.2
(3)
P 		27.9
(-2.2)
A 		38.2
(-1.3)
A 		19
(-3)
P 		69
B 57.7
(2.2)
P 		30.8
(-3)
P 		48.4
(0.4)
P 		61.6
(3)
P 		31
C 93.7
(3)
P 		36.9
(-1.7)
P 		39.1
(-1.5)
P 		20.8
(-3)
P 		73
avr 79.9
(3) 		31.9
(-3) 		41.9
(-1.8) 		33.8
(-2.8) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 19.7
(-2.3)
A 		34.8
(1.3)
P 		21.4
(-1.9)
P 		16.9
(-3)
A 		42.1
(3)
P 		35.5
(1.4)
P 		25
B 63.4
(3)
P 		46.4
(-0.2)
P 		31.2
(-3)
P 		34.8
(-2.3)
P 		46.5
(-0.1)
P 		52.9
(1)
P 		32
C 40.6
(0.1)
P 		46.5
(1)
P 		31.3
(-1.3)
P 		19.3
(-3)
P 		32.6
(-1.1)
P 		60.5
(3)
P 		41
avr 41.2
(1.1) 		42.6
(1.4) 		28
(-2) 		23.7
(-3) 		40.4
(0.9) 		49.6
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187455_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5301
Sequence Type Exemplar sequence
Representative Public ID K02A2.5 NCBI
Target Description K02A2.5 /REP_DB=WormBase Gene ID /WP=CE01993 /TR=SW:Q09401 /GB=AAC46704.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063153(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063153 NCBI Caenorhabditis elegans K02A2.5 (K02A2.5) mRNA, complete cds. 10/11 None
SNAP00000023847 ENSEMBL cdna:SNAP chromosome:CEL140:II:7411119:7411350:-1 11/11 None
GENEFINDER00000023853 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7411119:7411834:-1 10/11 None
K02A2.5 ENSEMBL cdna:known chromosome:CEL140:II:7411005:7411960:-1 gene:K02A2.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7411115-7411347(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02A2.5
Entrez Gene 186857 Entrez gene
SwissProt Q09401 EMBL-EBI
WormBase CE32056 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46704 Hypothetical protein K02A2.5 [Caenorhabditis elegans] ref|NP_495554.2| K02A2.5 [Caenorhabditis elegans] sp|Q09401|YRD5_CAEEL Hypothetical protein K02A2.5 in chromosome II precursor 7.0E-15
blast F88208 protein K02A2.5 [imported] - Caenorhabditis elegans 2.0E-11
blast AAC46704 Hypothetical protein K02A2.5 [Caenorhabditis elegans] ref|NP_495554.2| K02A2.5 [Caenorhabditis elegans] sp|Q09401|YRD5_CAEEL Hypothetical protein K02A2.5 in chromosome II precursor 2.0E-11
blast CAE67614 Hypothetical protein CBG13161 [Caenorhabditis briggsae] 1.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495554.2 1 10-28
K02A2.5 1 10-28
GENEFINDER00000023853 1 10-28
Sequence
Target Sequence 
>C. ELEGANS:187455_AT
atgctttcagacgatttctcattattctcgtacgactacgatgacaaagcagatgcacat
gatgcagacgccgcatttcgaaaatttgaagctttatgttcagcgaggtcacaacagcca
agtacctcaaaaccttcattaattgacgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTTTCAGACGATTTCTCATTAT 47 43 13 Antisense
ATTTCTCATTATTCTCGTACGACTA 116 17 26 Antisense
TATTCTCGTACGACTACGATGACAA 227 665 35 Antisense
GACTACGATGACAAAGCAGATGCAC 709 371 46 Antisense
ATGCACATGATGCAGACGCCGCATT 709 43 65 Antisense
CATGATGCAGACGCCGCATTTCGAA 648 205 70 Antisense
GCAGACGCCGCATTTCGAAAATTTG 264 309 76 Antisense
GAAGCTTTATGTTCAGCGAGGTCAC 370 341 100 Antisense
TTCAGCGAGGTCACAACAGCCAAGT 272 685 111 Antisense
ACAACAGCCAAGTACCTCAAAACCT 285 113 123 Antisense
CTCAAAACCTTCATTAATTGACGCT 598 225 138 Antisense
Sequence Source Affymetrix Proprietary Database