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[187453_at]

Description K06H7.7 /REP_DB=WormBase Gene ID /WP=CE00258 /TR=SW:P34515 /GB=AAF99983.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 94      6grp_total > 85      4grp_total > 01      6grp_high1_sub > In      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 186.5
(-3)
P 		207.6
(-2.5)
A 		225.9
(-2.1)
P 		435.9
(3)
P 		249
B 212
(-2.3)
P 		179.9
(-3)
M 		186.1
(-2.9)
P 		452.1
(3)
P 		272
C 211.8
(-1.3)
P 		146.1
(-3)
A 		248.2
(-0.4)
P 		381.6
(3)
P 		236
avr 203.4
(-2.4) 		177.9
(-3) 		220.1
(-2) 		423.2
(3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 467
1 2 3 4 5 6 range
A 221.1
(-2.3)
A 		193.2
(-3)
P 		280.4
(-0.7)
P 		360.4
(1.3)
P 		424.1
(3)
P 		363.8
(1.4)
P 		231
B 191.5
(-3)
P 		256.9
(-2)
P 		334.3
(-0.8)
P 		322.5
(-1)
P 		330.8
(-0.9)
P 		582.2
(3)
P 		391
C 115.7
(-3)
P 		259.6
(-0)
P 		232.8
(-0.6)
P 		407.2
(3)
P 		337.7
(1.6)
P 		402.3
(2.9)
P 		292
avr 176.1
(-3) 		236.6
(-1.7) 		282.5
(-0.7) 		363.4
(1.1) 		364.2
(1.1) 		449.4
(3) 		273
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 67.9
(3)
P 		45.1
(-3)
A 		59
(0.7)
P 		63.8
(1.9)
P 		23
B 67.6
(-0.2)
P 		44.4
(-2.9)
M 		43.1
(-3)
P 		96.3
(3)
P 		53
C 70.1
(0.8)
P 		42
(-3)
A 		86.5
(3)
P 		64.3
(0)
P 		45
avr 68.5
(1.8) 		43.8
(-3) 		62.9
(0.7) 		74.8
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 40.8
(-3)
A 		68.7
(-1.1)
P 		61.1
(-1.6)
P 		91.4
(0.5)
P 		128
(3)
P 		88.6
(0.3)
P 		87
B 66.6
(-3)
P 		85.5
(-2.2)
P 		81.2
(-2.4)
P 		85.4
(-2.3)
P 		134.4
(-0.3)
P 		217.1
(3)
P 		151
C 42.9
(-3)
P 		79.2
(-0.6)
P 		59.3
(-1.9)
P 		81.9
(-0.5)
P 		109.3
(1.3)
P 		134.7
(3)
P 		92
avr 50.1
(-3) 		77.8
(-1.3) 		67.2
(-1.9) 		86.2
(-0.8) 		123.9
(1.6) 		146.8
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187453_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6635
Sequence Type Exemplar sequence
Representative Public ID K06H7.7 NCBI
Target Description K06H7.7 /REP_DB=WormBase Gene ID /WP=CE00258 /TR=SW:P34515 /GB=AAF99983.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066362 NCBI Caenorhabditis elegans K06H7.7 (K06H7.7) mRNA, complete cds. 11/11 None
SNAP00000036730 ENSEMBL cdna:SNAP chromosome:CEL140:III:8083707:8085386:-1 11/11 None
GENEFINDER00000036744 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8083707:8085386:-1 11/11 None
K06H7.7 ENSEMBL cdna:known chromosome:CEL140:III:8083707:8084932:-1 gene:K06H7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8083704-8084930(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06H7.7
Entrez Gene 187078 Entrez gene
SwissProt P34515 EMBL-EBI
WormBase CE00258 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99983 Hypothetical protein K06H7.7 [Caenorhabditis elegans] ref|NP_498763.1| K06H7.7 [Caenorhabditis elegans] sp|P34515|YMX7_CAEEL Hypothetical protein K06H7.7 in chromosome III 1.0E-174
blast AAF99983 Hypothetical protein K06H7.7 [Caenorhabditis elegans] ref|NP_498763.1| K06H7.7 [Caenorhabditis elegans] sp|P34515|YMX7_CAEEL Hypothetical protein K06H7.7 in chromosome III 1.0E-171
blast AAF99983 Hypothetical protein K06H7.7 [Caenorhabditis elegans] ref|NP_498763.1| K06H7.7 [Caenorhabditis elegans] sp|P34515|YMX7_CAEEL Hypothetical protein K06H7.7 in chromosome III 1.0E-164
blast CAE75058 Hypothetical protein CBG22972 [Caenorhabditis briggsae] 3.0E-65
blast CAE75058 Hypothetical protein CBG22972 [Caenorhabditis briggsae] 7.0E-62
blast CAE75058 Hypothetical protein CBG22972 [Caenorhabditis briggsae] 7.0E-57
Sequence
Target Sequence 
>C. ELEGANS:187453_AT
tgtacacatttgactggaaccactactcgaaaaagaacattcaatatgttgtgttcacaa
aggtctgccaatcacacgccccaggtcattttgtcgagatgctaaaggaagattgtagtt
gccgagactgtggaagtgctgatttggcagttaaagttcgccttacagtaccacttgatt
tgtctgatatcccgataccatgcagtgaagatatacagatccacgtgtcatttctggctg
acgatctcttggaaagacatatatcatcaaatgtgaatagaagttcgaatagagatgatc
tggacttttcgagaagaacgtgtgaaaagatgtacgatttgtatcaaaaaatgatgagag
gacaatcaagtcgcatgtacacagaatggttcgataagtgcaaaatttttgtgaagaatt
ttctcttctccaagtcgcttcatctttatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACACATTTGACTGGAACCACTA 413 559 440 Antisense
TCACAAAGGTCTGCCAATCACACGC 25 629 494 Antisense
GCCCCAGGTCATTTTGTCGAGATGC 631 285 517 Antisense
GTTGCCGAGACTGTGGAAGTGCTGA 150 441 557 Antisense
AAAGTTCGCCTTACAGTACCACTTG 560 121 592 Antisense
ACCACTTGATTTGTCTGATATCCCG 242 85 609 Antisense
GATATCCCGATACCATGCAGTGAAG 619 425 625 Antisense
GATATACAGATCCACGTGTCATTTC 625 425 649 Antisense
ATTTCTGGCTGACGATCTCTTGGAA 105 17 669 Antisense
GAGGACAATCAAGTCGCATGTACAC 178 405 797 Antisense
TCTCCAAGTCGCTTCATCTTTATCA 479 609 866 Antisense
Sequence Source Affymetrix Proprietary Database