[Home] | [Total List]

[187451_at]

Description K10B2.4 /REP_DB=WormBase Gene ID /WP=CE02011 /TR=SW:Q09993 /GB=AAA68261.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 56      6grp_total > 51      4grp_total > 56      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1397
1 2 3 4 range
A 1509.3
(-3)
P 		2120.3
(-0.1)
P 		2788.8
(3)
P 		1548.5
(-2.8)
P 		1280
B 1728
(-2.3)
P 		2140.2
(-0)
P 		2671.4
(3)
P 		1609.2
(-3)
P 		1062
C 1391.4
(-3)
P 		2178.5
(1.9)
P 		2346.8
(3)
P 		1552.3
(-2)
P 		955
avr 1542.9
(-3) 		2146.3
(0.4) 		2602.3
(3) 		1570
(-2.8) 		1059

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1008
1 2 3 4 5 6 range
A 1881.7
(-0.7)
P 		1631.9
(-2.2)
P 		2509.7
(3)
P 		2338.1
(2)
P 		1501.6
(-3)
P 		1682
(-1.9)
P 		1008
B 1640.2
(-2.1)
P 		1845.7
(-0.7)
P 		2393.7
(3)
P 		2016.7
(0.4)
P 		1508.4
(-3)
P 		1640.7
(-2.1)
P 		885
C 1634.2
(-2.2)
P 		1737.1
(-1.4)
P 		2247.2
(2.5)
P 		2317.2
(3)
P 		1528.6
(-3)
P 		1828
(-0.7)
P 		789
avr 1718.7
(-1.6) 		1738.2
(-1.4) 		2383.5
(3) 		2224
(1.9) 		1512.9
(-3) 		1716.9
(-1.6) 		871
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 591
1 2 3 4 range
A 549.6
(0.9)
P 		460.3
(-0.2)
P 		729.1
(3)
P 		226.7
(-3)
P 		502
B 551
(1.5)
P 		528.6
(1)
P 		619
(3)
P 		342.9
(-3)
P 		276
C 460.6
(-0.9)
P 		626.3
(0.9)
P 		817.9
(3)
P 		261.7
(-3)
P 		556
avr 520.4
(0.3) 		538.4
(0.5) 		722
(3) 		277.1
(-3) 		445

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 268
1 2 3 4 5 6 range
A 346.9
(-3)
P 		580.4
(2.7)
P 		546.6
(1.9)
P 		593
(3)
P 		453.1
(-0.4)
P 		409.5
(-1.5)
P 		246
B 570.7
(-0.3)
P 		614.4
(3)
P 		581.3
(0.5)
P 		534.1
(-3)
P 		612.8
(2.9)
P 		611.8
(2.8)
P 		80
C 605.7
(2.7)
P 		530.1
(-0.4)
P 		572
(1.4)
P 		466
(-3)
P 		494.6
(-1.8)
P 		611.9
(3)
P 		146
avr 507.8
(-3) 		575
(3) 		566.6
(2.3) 		531
(-0.9) 		520.2
(-1.9) 		544.4
(0.3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187451_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4251
Sequence Type Exemplar sequence
Representative Public ID K10B2.4 NCBI
Target Description K10B2.4 /REP_DB=WormBase Gene ID /WP=CE02011 /TR=SW:Q09993 /GB=AAA68261.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062880(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062880 NCBI Caenorhabditis elegans K10B2.4 (K10B2.4) mRNA, complete cds. 11/11 None
SNAP00000015729 ENSEMBL cdna:SNAP chromosome:CEL140:II:6360320:6360826:-1 11/11 None
GENEFINDER00000015738 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6360320:6360826:-1 11/11 None
K10B2.4 ENSEMBL cdna:known chromosome:CEL140:II:6360290:6360874:-1 gene:K10B2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6360316-6360823(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10B2.4
Entrez Gene 174054 Entrez gene
SwissProt Q09993 EMBL-EBI
WormBase CE02011 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583167_X_AT similar to UPF0139 protein CGI-140 cfa
CANINE_2:CFA.4048.1.A1_A_AT similar to UPF0139 protein CGI-140 cfa
CANINE_2:CFAAFFX.26385.1.S1_AT similar to UPF0139 protein CGI-140 cfa
CANINE_2:CFAAFFX.26385.1.S1_S_AT similar to UPF0139 protein CGI-140 cfa
DROSOPHILA_2:1633210_AT dm
DROSGENOME1:148211_AT dm
HG-U133A:217780_AT PTD008 protein hs
HG-U133_PLUS_2:217780_AT PTD008 protein hs
HG-U133A_2:217780_AT PTD008 protein hs
HG-U95B:56412_AT PTD008 protein hs
HU35KSUBD:RC_N23673_AT PTD008 protein hs
U133_X3P:G7706664_3P_AT PTD008 protein hs
MG-U74AV2:98516_AT cDNA sequence BC056474 mm
MOE430A:1424117_AT cDNA sequence BC056474 mm
MOUSE430A_2:1424117_AT cDNA sequence BC056474 mm
MOUSE430_2:1424117_AT cDNA sequence BC056474 mm
MU19KSUBB:TC33942_AT CDNA sequence BC056474, mRNA (cDNA clone MGC:107693 IMAGE:30118707) mm
MU19KSUBB:TC33942_G_AT CDNA sequence BC056474, mRNA (cDNA clone MGC:107693 IMAGE:30118707) mm
RG-U34C:AA800364_AT similar to cDNA sequence BC056474 rn
RAE230A:1371410_AT similar to cDNA sequence BC056474 rn
RAT230_2:1371410_AT similar to cDNA sequence BC056474 rn
Protein Similarities
Method ID Description E-Value
blast AAA68261 Hypothetical protein K10B2.4 [Caenorhabditis elegans] ref|NP_495281.1| K10B2.4 [Caenorhabditis elegans] sp|Q09993|U139_CAEEL Hypothetical UPF0139 protein K10B2.4 in chromosome II 2.0E-60
blast CAE59302 Hypothetical protein CBG02637 [Caenorhabditis briggsae] 3.0E-59
blast EAA04290 ENSANGP00000015128 [Anopheles gambiae str. PEST] ref|XP_308770.2| ENSANGP00000015128 [Anopheles gambiae str. PEST] 4.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR005351 EMBL-EBI Protein of unknown function UPF0139 6.0E-74
Sequence
Target Sequence 
>C. ELEGANS:187451_AT
gagatccacgacgcacgaatcgaattgttcgatataaaccactcgactcgactgcaaatc
agcagcaagccatcagcgaggatccacttccagagtacatgaatgtactcggcatgattt
tcagcatgtgtggattgatgatccgaatgaaatggtgctcttggttggctctggtttgct
catgcatttcgttcgctaatactcgaacctccgatgatgccaaacaaattgtcagcagct
tcatgctttccgtctctgccgttgtgatgagctatcttcaaaacccttctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATCCACGACGCACGAATCGAAT 95 397 26 Antisense
AAACCACTCGACTCGACTGCAAATC 578 125 61 Antisense
AATCAGCAGCAAGCCATCAGCGAGG 136 171 82 Antisense
ATCAGCGAGGATCCACTTCCAGAGT 177 29 97 Antisense
ATGTACTCGGCATGATTTTCAGCAT 545 47 128 Antisense
TGAAATGGTGCTCTTGGTTGGCTCT 364 563 173 Antisense
TTTGCTCATGCATTTCGTTCGCTAA 310 669 200 Antisense
TAATACTCGAACCTCCGATGATGCC 519 635 222 Antisense
AATTGTCAGCAGCTTCATGCTTTCC 253 179 252 Antisense
CCGTCTCTGCCGTTGTGATGAGCTA 450 265 275 Antisense
TGAGCTATCTTCAAAACCCTTCTCC 610 569 293 Antisense
Sequence Source Affymetrix Proprietary Database