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[187450_at]

Description 6R55.1 /REP_DB=WormBase Gene ID /WP=CE19652 /CHR=X /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XTD8 protein_id:CAA20192.1
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 01      6grp_total > 17      4grp_total > 01      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4706
1 2 3 4 range
A 1245.1
(-3)
P 		1649.7
(-2.5)
P 		2122.9
(-1.9)
P 		5951.3
(3)
P 		4706
B 1545.6
(-2.9)
P 		1476.7
(-3)
P 		2025
(-2.2)
P 		5797.8
(3)
P 		4321
C 1346.4
(-3)
P 		1457.6
(-2.8)
P 		1981.7
(-1.9)
P 		4951.1
(3)
P 		3605
avr 1379
(-3) 		1528
(-2.8) 		2043.2
(-2) 		5566.7
(3) 		4188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1827
1 2 3 4 5 6 range
A 3050.1
(3)
P 		1527
(-2.1)
P 		1524.5
(-2.1)
P 		1251.2
(-3)
P 		1603.4
(-1.8)
P 		2049.3
(-0.3)
P 		1799
B 2846.7
(3)
P 		1603.9
(-1.8)
P 		1749
(-1.2)
P 		1582.4
(-1.9)
P 		1289.1
(-3)
P 		2076.1
(0)
P 		1558
C 2119
(3)
P 		1596.4
(-0.5)
P 		1590.8
(-0.5)
P 		1529.7
(-0.9)
P 		1222.9
(-3)
P 		2055.4
(2.6)
P 		896
avr 2671.9
(3) 		1575.8
(-2.1) 		1621.4
(-1.8) 		1454.4
(-2.6) 		1371.8
(-3) 		2060.3
(0.2) 		1300
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 877
1 2 3 4 range
A 453.3
(-1.9)
P 		358.1
(-3)
P 		555
(-0.7)
P 		871.2
(3)
P 		513
B 492.9
(-2.1)
P 		364.7
(-3)
P 		469.2
(-2.3)
P 		1235.5
(3)
P 		871
C 445.7
(-2.6)
P 		419.1
(-3)
P 		690.7
(0.9)
P 		834.8
(3)
P 		416
avr 464
(-2.2) 		380.6
(-3) 		571.6
(-1.1) 		980.5
(3) 		600

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 683
1 2 3 4 5 6 range
A 562.3
(3)
P 		543.1
(2.5)
P 		332
(-2.6)
P 		317.3
(-3)
P 		483.8
(1.1)
P 		498.9
(1.4)
P 		245
B 990.5
(3)
P 		533.9
(-1.8)
P 		424.7
(-2.9)
P 		419.1
(-3)
P 		523.7
(-1.9)
P 		774.2
(0.7)
P 		571
C 785.4
(3)
P 		487.1
(-0.7)
P 		404.9
(-1.8)
P 		307.6
(-3)
P 		395.7
(-1.9)
P 		688.1
(1.8)
P 		478
avr 779.4
(3) 		521.4
(-0.6) 		387.2
(-2.5) 		348
(-3) 		467.7
(-1.3) 		653.7
(1.3) 		431
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187450_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17883
Sequence Type Exemplar sequence
Representative Public ID 6R55.1 NCBI
Target Description 6R55.1 /REP_DB=WormBase Gene ID /WP=CE19652 /CHR=X /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q9XTD8 protein_id:CAA20192.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078463(11), NM_078464(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078463 NCBI Caenorhabditis elegans 6R55.1b (6R55.1) mRNA, complete cds. 11/11 A 
NM_078464 NCBI Caenorhabditis elegans 6R55.1a (6R55.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000030213 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17714876:17718529:1 11/11 None
6R55.1b ENSEMBL cdna:known chromosome:CEL140:X:17714874:17718629:1 gene:6R55.1 11/11 A 
6R55.1a ENSEMBL cdna:known chromosome:CEL140:X:17714876:17718593:1 gene:6R55.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030212 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17714874-17718528(+) 100.0 100.0
Public Domain and Genome References
Ensembl 6R55.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20192 Hypothetical protein 6R55.1a [Caenorhabditis elegans] ref|NP_510865.1| 6R55.1a [Caenorhabditis elegans] 1.0E-127
blast CAC35870 Hypothetical protein 6R55.1b [Caenorhabditis elegans] ref|NP_510864.1| 6R55.1b [Caenorhabditis elegans] 1.0E-121
blast CAE70007 Hypothetical protein CBG16421 [Caenorhabditis briggsae] 1.0E-103
blast CAA20192 Hypothetical protein 6R55.1a [Caenorhabditis elegans] ref|NP_510865.1| 6R55.1a [Caenorhabditis elegans] 2.0E-89
blast CAC35870 Hypothetical protein 6R55.1b [Caenorhabditis elegans] ref|NP_510864.1| 6R55.1b [Caenorhabditis elegans] 2.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR006838 EMBL-EBI FAR-17a/AIG1-like protein 1.8E-91
Pfam IPR006838 EMBL-EBI FAR-17a/AIG1-like protein 3.3E-78
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510864.1 5 5-27,42-64,76-98,113-135,142-164
NP_510865.1 6 5-27,42-64,76-98,113-132,145-167,187-209
6R55.1b 5 5-27,42-64,76-98,113-135,142-164
6R55.1a 6 5-27,42-64,76-98,113-132,145-167,187-209
GENEFINDER00000030213 6 5-27,42-64,76-98,113-132,145-167,187-209
Sequence
Target Sequence 
>C. ELEGANS:187450_AT
ccaccattgtcactggagcactcttgccaatcccttaccagacatggtcccgatttgtat
ggctgactattattgacttgtacatgcaacttctctaccacaccattggtttcatcctcg
ccgtcgtttccccgaacaagagacacatcatctttgactattgggcacgtgctctcaccg
gacccattggagttgcggtcaccgttcttttctggggactcttcctctttgacccggcaa
cactggctcgtgatgaaatggcaatgaagatcctgacacttttctggttcaatcacggac
ttcacaccctccccgcaatcactgcccacttggaccttgccatctacaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCATTGTCACTGGAGCACTCTT 531 273 77 Antisense
TGCCAATCCCTTACCAGACATGGTC 500 587 101 Antisense
AGACATGGTCCCGATTTGTATGGCT 190 71 116 Antisense
TTGTACATGCAACTTCTCTACCACA 175 705 154 Antisense
CTACCACACCATTGGTTTCATCCTC 453 225 171 Antisense
GTTTCCCCGAACAAGAGACACATCA 76 451 202 Antisense
CTTTGACTATTGGGCACGTGCTCTC 360 223 228 Antisense
TCTCACCGGACCCATTGGAGTTGCG 122 613 249 Antisense
GAAGATCCTGACACTTTTCTGGTTC 313 335 342 Antisense
TCTGGTTCAATCACGGACTTCACAC 636 607 359 Antisense
CACTTGGACCTTGCCATCTACAATC 363 195 403 Antisense
Sequence Source Affymetrix Proprietary Database