[Home] | [Total List]

[187449_s_at]

Description C08B11.9 /REP_DB=WormBase Gene ID /WP=CE01479 /TR=SW:Q09227 /GB=CAA86668.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 73      6grp_total > 37      4grp_total > 17      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 690
(-1.2)
P 		631.3
(-3)
P 		766.9
(1.1)
P 		828.4
(3)
P 		197
B 520.7
(-3)
P 		660
(3)
P 		628.4
(1.6)
P 		594.5
(0.2)
P 		139
C 648.3
(-2.1)
P 		702.4
(-0.9)
P 		606.5
(-3)
P 		876
(3)
P 		270
avr 619.7
(-3) 		664.6
(-1.2) 		667.3
(-1.1) 		766.3
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 512
1 2 3 4 5 6 range
A 914.1
(3)
P 		652.4
(-0.3)
P 		460.4
(-2.8)
P 		489
(-2.4)
P 		441.4
(-3)
P 		538.8
(-1.8)
P 		473
B 536.7
(-0.5)
P 		611.7
(3)
P 		484.4
(-3)
P 		575.3
(1.3)
P 		504
(-2.1)
P 		567.6
(0.9)
P 		127
C 476.6
(-1.2)
P 		620.3
(2.4)
P 		402.6
(-3)
P 		497.5
(-0.6)
P 		451.3
(-1.8)
P 		642.9
(3)
P 		240
avr 642.5
(3) 		628.1
(2.6) 		449.1
(-3) 		520.6
(-0.8) 		465.6
(-2.5) 		583.1
(1.2) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 251.2
(3)
P 		137
(-2.3)
P 		200.5
(0.7)
P 		121.3
(-3)
P 		130
B 166
(3)
P 		163
(2.5)
P 		145.6
(-0.1)
P 		126.7
(-3)
P 		39
C 214.6
(3)
P 		201.9
(1.9)
P 		211.4
(2.7)
P 		147.7
(-3)
P 		67
avr 210.6
(3) 		167.3
(-0.3) 		185.8
(1.1) 		131.9
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 168.5
(0.1)
P 		232
(3)
P 		100.3
(-3)
P 		124
(-1.9)
P 		133.2
(-1.5)
P 		131.2
(-1.6)
P 		132
B 186.7
(1.4)
P 		203.6
(2.5)
P 		117.6
(-3)
P 		152.4
(-0.8)
P 		204.8
(2.6)
P 		211.7
(3)
P 		94
C 176.7
(1)
P 		189.3
(1.7)
P 		102.5
(-2.9)
P 		100
(-3)
P 		146
(-0.6)
P 		215.2
(3)
P 		115
avr 177.3
(1.2) 		208.3
(3) 		106.8
(-3) 		125.5
(-1.9) 		161.3
(0.2) 		186
(1.7) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187449_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3580
Sequence Type Exemplar sequence
Representative Public ID C08B11.9 NCBI
Target Description C08B11.9 /REP_DB=WormBase Gene ID /WP=CE01479 /TR=SW:Q09227 /GB=CAA86668.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026763(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026763 NCBI Caenorhabditis elegans C08B11.9 (C08B11.9) mRNA, complete cds. 11/11 None
SNAP00000039308 ENSEMBL cdna:SNAP chromosome:CEL140:II:8037463:8038086:-1 11/11 None
GENEFINDER00000039311 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8037463:8038086:-1 11/11 None
C08B11.9 ENSEMBL cdna:known chromosome:CEL140:II:8034257:8038088:-1 gene:C08B11.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8037459-8038062(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08B11.9
Entrez Gene 3564855 Entrez gene
SwissProt Q09227 EMBL-EBI
WormBase CE01479 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.4645.1.S1_AT similar to CG31800-PA cfa
DROSOPHILA_2:1635027_AT dm
CHICKEN:GGA.12146.1.S1_AT similar to hypothetical protein MGC955 gga
HG-U133_PLUS_2:219406_AT chromosome 1 open reading frame 50 hs
HG-U133A:219406_AT chromosome 1 open reading frame 50 hs
HG-U133A_2:219406_AT chromosome 1 open reading frame 50 hs
HU35KSUBC:RC_W42541_AT chromosome 1 open reading frame 50 hs
U133_X3P:G13129101_3P_S_AT chromosome 1 open reading frame 50 hs
U133_X3P:G13129101_3P_AT chromosome 1 open reading frame 50 hs
U133_X3P:62212_3P_AT chromosome 1 open reading frame 50 hs
U133_X3P:4858649_3P_AT chromosome 1 open reading frame 50 hs
HG-U133A_2:62212_AT chromosome 1 open reading frame 50 hs
HG-U133_PLUS_2:62212_AT chromosome 1 open reading frame 50 hs
HG-U133A:62212_AT chromosome 1 open reading frame 50 hs
HG-U95C:62212_AT chromosome 1 open reading frame 50 hs
HU35KSUBB:RC_N52298_AT Chromosome 1 open reading frame 50 hs
HU35KSUBD:RC_R07976_AT Chromosome 1 open reading frame 50 hs
MG-U74BV2:115878_AT expressed sequence AU022252 mm
MOE430B:1438226_AT expressed sequence AU022252 mm
MOUSE430_2:1438226_AT expressed sequence AU022252 mm
MG-U74BV2:114926_AT Expressed sequence AU022252 (AU022252), mRNA mm
MU19KSUBA:TC25311_AT Expressed sequence AU022252 (AU022252), mRNA mm
MU19KSUBC:TC37756_AT Expressed sequence AU022252 (AU022252), mRNA mm
MU19KSUBC:TC38697_S_AT Expressed sequence AU022252 (AU022252), mRNA mm
RG-U34B:RC_AA944840_AT similar to chromosome 1 open reading frame 50 rn
RAE230B:1392485_AT similar to chromosome 1 open reading frame 50 rn
RAT230_2:1392485_AT similar to chromosome 1 open reading frame 50 rn
RAE230B:1394327_AT similar to chromosome 1 open reading frame 50 rn
RAT230_2:1394327_AT similar to chromosome 1 open reading frame 50 rn
Protein Similarities
Method ID Description E-Value
blast CAA86668 Hypothetical protein C08B11.9 [Caenorhabditis elegans] ref|NP_001021934.1| C08B11.9 [Caenorhabditis elegans] sp|Q09227|YP89_CAEEL Hypothetical protein C08B11.9 in chromosome II (1207-1) 1.0E-103
blast CAE67772 Hypothetical protein CBG13347 [Caenorhabditis briggsae] 2.0E-90
blast CAE67772 Hypothetical protein CBG13347 [Caenorhabditis briggsae] 4.0E-88
blast AAC47512 hypothetical protein 1207-1 [Caenorhabditis elegans] 1.0E-58
Sequence
Target Sequence 
>C. ELEGANS:187449_S_AT
tggcgagtgatatgcctcttgtccagcttccacaaagaggagaaagaataaacgttcctc
tcgtgcagtcccgaagtgaagatcagcgccttgtaaccagtgctcgtcaaactgacaaaa
ttgatgccgatgatttggtcgcgctggcaaatcagttaaacagtgcccgccaattggtga
aaggaagagcttgcgatcgtctgaagcaaattgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCGAGTGATATGCCTCTTGTCCA 233 545 14 Antisense
TCTTGTCCAGCTTCCACAAAGAGGA 399 613 30 Antisense
CTCTCGTGCAGTCCCGAAGTGAAGA 624 227 71 Antisense
GTCCCGAAGTGAAGATCAGCGCCTT 550 475 81 Antisense
AGATCAGCGCCTTGTAACCAGTGCT 134 67 93 Antisense
TGTAACCAGTGCTCGTCAAACTGAC 519 553 105 Antisense
ATGCCGATGATTTGGTCGCGCTGGC 613 41 137 Antisense
GGTCGCGCTGGCAAATCAGTTAAAC 644 501 150 Antisense
TAAACAGTGCCCGCCAATTGGTGAA 130 639 170 Antisense
GAAAGGAAGAGCTTGCGATCGTCTG 448 361 192 Antisense
TGCGATCGTCTGAAGCAAATTGCCG 669 581 205 Antisense
Sequence Source Affymetrix Proprietary Database