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[187448_at]

Description ZK1098.5 /REP_DB=WormBase Gene ID /WP=CE00368 /TR=SW:P34605 /GB=CAA80133.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 65      6grp_total > 64      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 871
(-3)
P 		963
(2)
P 		873.5
(-2.9)
P 		982
(3)
P 		111
B 860.4
(-2.1)
P 		838
(-3)
P 		986
(2.9)
P 		987.4
(3)
P 		149
C 735.1
(-3)
P 		987.1
(3)
P 		919.6
(1.4)
P 		804.5
(-1.3)
P 		252
avr 822.2
(-3) 		929.4
(3) 		926.4
(2.8) 		924.6
(2.7) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 602
1 2 3 4 5 6 range
A 1044
(-0.4)
P 		813.6
(-3)
P 		1351
(3)
P 		1154.3
(0.8)
P 		1001
(-0.9)
P 		1029.9
(-0.6)
P 		537
B 1260.4
(1.2)
P 		1096.8
(-0.7)
P 		1415.9
(3)
P 		894.4
(-3)
P 		1122.5
(-0.4)
P 		1333.7
(2.1)
P 		522
C 824.4
(-3)
P 		1136.5
(0.2)
P 		1017.3
(-1)
P 		1411.2
(3)
P 		1051.7
(-0.7)
P 		1311.5
(2)
P 		587
avr 1042.9
(-2.3) 		1015.6
(-3) 		1261.4
(3) 		1153.3
(0.4) 		1058.4
(-2) 		1225
(2.1) 		246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 317.1
(3)
P 		209
(-0.7)
P 		228.4
(-0.1)
P 		143.7
(-3)
P 		173
B 274.4
(3)
P 		207
(-3)
P 		228.5
(-1.1)
P 		210.4
(-2.7)
P 		67
C 243.3
(0.5)
P 		283.8
(1.8)
P 		320.5
(3)
P 		135.7
(-3)
P 		185
avr 278.3
(3) 		233.3
(0.7) 		259.1
(2) 		163.3
(-3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 192.5
(-3)
P 		289.4
(2.3)
P 		294.2
(2.6)
P 		292.8
(2.5)
P 		302.1
(3)
P 		250.7
(0.2)
P 		110
B 438.5
(1.6)
P 		365.1
(-0)
P 		343.8
(-0.5)
P 		236.9
(-3)
P 		456.1
(2.1)
P 		497.3
(3)
P 		260
C 305.6
(-1.4)
P 		346.8
(-0.1)
P 		258.9
(-3)
P 		283.8
(-2.2)
P 		340.3
(-0.3)
P 		439
(3)
P 		180
avr 312.2
(-1) 		333.8
(0) 		299
(-1.7) 		271.2
(-3) 		366.2
(1.6) 		395.7
(3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187448_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6287
Sequence Type Exemplar sequence
Representative Public ID ZK1098.5 NCBI
Target Description ZK1098.5 /REP_DB=WormBase Gene ID /WP=CE00368 /TR=SW:P34605 /GB=CAA80133.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066699 NCBI Caenorhabditis elegans ZK1098.5 (ZK1098.5) mRNA, complete cds. 11/11 None
SNAP00000005011 ENSEMBL cdna:SNAP chromosome:CEL140:III:9525538:9526904:1 11/11 None
GENEFINDER00000005024 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9525538:9526904:1 11/11 None
ZK1098.5 ENSEMBL cdna:known chromosome:CEL140:III:9525448:9526964:1 gene:ZK1098.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9525443-9526900(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1098.5
Entrez Gene 176344 Entrez gene
SwissProt P34605 EMBL-EBI
WormBase CE00368 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80133 Hypothetical protein ZK1098.5 [Caenorhabditis elegans] ref|NP_499100.1| ZK1098.5 [Caenorhabditis elegans] sp|P34605|TPPC3_CAEEL Probable trafficking protein particle complex subunit 3.0E-98
blast Q61IU9 Probable trafficking protein particle complex subunit 3 emb|CAE65189.1| Hypothetical protein CBG10062 [Caenorhabditis briggsae] 8.0E-94
blast CAA80133 Hypothetical protein ZK1098.5 [Caenorhabditis elegans] ref|NP_499100.1| ZK1098.5 [Caenorhabditis elegans] sp|P34605|TPPC3_CAEEL Probable trafficking protein particle complex subunit 1.0E-90
blast Q61IU9 Probable trafficking protein particle complex subunit 3 emb|CAE65189.1| Hypothetical protein CBG10062 [Caenorhabditis briggsae] 3.0E-86
blast XP_513093 PREDICTED: similar to Trafficking protein particle complex subunit 3 (BET3 homolog) [Pan troglodytes] ref|NP_055223.1| BET3 homolog [Homo sapiens] gb|AAH07662.1| BET3 homolog [Homo sapiens] gb|AAG02000.1| similar to Homo sapiens bet3 (BET3),mRNA with GenBank Accession Number AF041432 sp|O43617|TPPC3_HUMAN Trafficking protein particle complex subunit 3 (BET3 homolog) gb|AAB96936.1| bet3 [Homo sapiens] emb|CAA11902.1| hBET3 protein [Homo sapiens] 5.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR007194 EMBL-EBI Transport protein particle (TRAPP) component, Bet3 6.0E-57
Pfam IPR007194 EMBL-EBI Transport protein particle (TRAPP) component, Bet3 6.0E-57
Sequence
Target Sequence 
>C. ELEGANS:187448_AT
aattattctgtctcacttatggtgcaatggtcactgaaatgttgaaggactacgaggatc
caaaggatgtaactattcaattggataagatgggatttaatatgggcacccgccttgccg
acgactttcttgccaaaaacgccaatgttccacgatgcgttgacactcgacaaatcgctg
atgtcctgtgtcgaaatgcgattccctgttatctcggaatttcagccacagcttcatcgt
ggacaagtggcgatcgtgaatttacgattacacttgaagcgaatccacttacggaattag
ttcaggtacccgcacaccttgtttcggccggtctttcctactctcaactgattgctggtg
caattcgtggtgctcttgaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTATTCTGTCTCACTTATGGTGC 421 175 65 Antisense
GGATTTAATATGGGCACCCGCCTTG 398 509 157 Antisense
GACGACTTTCTTGCCAAAAACGCCA 164 377 184 Antisense
CGCCAATGTTCCACGATGCGTTGAC 670 257 204 Antisense
ATGCGTTGACACTCGACAAATCGCT 703 41 219 Antisense
GCTGATGTCCTGTGTCGAAATGCGA 470 295 241 Antisense
GAAATGCGATTCCCTGTTATCTCGG 606 361 257 Antisense
GTTATCTCGGAATTTCAGCCACAGC 539 447 272 Antisense
GGAATTAGTTCAGGTACCCGCACAC 636 531 357 Antisense
TCTTTCCTACTCTCAACTGATTGCT 604 615 396 Antisense
GTGCAATTCGTGGTGCTCTTGAAGC 540 481 422 Antisense
Sequence Source Affymetrix Proprietary Database