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[187447_at]

Description R06F6.11 /REP_DB=WormBase Gene ID /WP=CE01617 /TR=SW:Q09418 /GB=CAA86781.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 12      6grp_total > 23      4grp_total > 11      6grp_highest_sub > De      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2375
1 2 3 4 range
A 2949.5
(-2)
P 		2917.8
(-2.1)
P 		2659.9
(-3)
P 		4379.5
(3)
P 		1720
B 2925.9
(-0.9)
P 		2528.2
(-2.2)
P 		2255.8
(-3)
P 		4189.9
(3)
P 		1934
C 3007.7
(-1.4)
P 		3357.4
(-0.4)
P 		2415.4
(-3)
P 		4630.5
(3)
P 		2215
avr 2961
(-1.4) 		2934.5
(-1.5) 		2443.7
(-3) 		4400
(3) 		1956

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1846
1 2 3 4 5 6 range
A 2195.4
(0.8)
P 		2769.9
(3)
P 		2315.8
(1.3)
P 		2550.8
(2.2)
P 		1174.5
(-3)
P 		1813.5
(-0.6)
P 		1595
B 1915.2
(3)
P 		1891.8
(2.7)
P 		1749
(0.6)
P 		1671.3
(-0.5)
P 		1508.7
(-2.9)
P 		1501
(-3)
P 		414
C 3020.2
(3)
P 		1898.5
(-2)
P 		2496.8
(0.7)
P 		1689.2
(-2.9)
P 		1825.7
(-2.3)
P 		1677.3
(-3)
P 		1343
avr 2376.9
(3) 		2186.7
(1.7) 		2187.2
(1.7) 		1970.4
(0.2) 		1503
(-3) 		1663.9
(-1.9) 		874
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 551
1 2 3 4 range
A 1073.9
(3)
P 		633.4
(-3)
P 		695.3
(-2.2)
P 		641.1
(-2.9)
P 		441
B 933
(3)
P 		624.4
(-1.5)
P 		522.7
(-3)
P 		892.9
(2.4)
P 		410
C 995.6
(3)
P 		965.3
(2.2)
P 		841.8
(-1.3)
P 		780.8
(-3)
P 		215
avr 1000.8
(3) 		741
(-2) 		686.6
(-3) 		771.6
(-1.4) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 780
1 2 3 4 5 6 range
A 404.7
(-2.5)
P 		985.1
(3)
P 		504.3
(-1.6)
P 		646.9
(-0.2)
P 		354.4
(-3)
P 		441.5
(-2.2)
P 		631
B 666.4
(3)
P 		629.7
(2.1)
P 		424.7
(-3)
P 		442.7
(-2.6)
P 		613
(1.7)
P 		559.7
(0.4)
P 		242
C 1119.4
(3)
P 		579.3
(-1.2)
P 		635.5
(-0.7)
P 		339.7
(-3)
P 		590.8
(-1.1)
P 		561.5
(-1.3)
P 		780
avr 730.2
(3) 		731.4
(3) 		521.5
(-1.9) 		476.4
(-3) 		519.4
(-2) 		520.9
(-2) 		255
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187447_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3366
Sequence Type Exemplar sequence
Representative Public ID R06F6.11 NCBI
Target Description R06F6.11 /REP_DB=WormBase Gene ID /WP=CE01617 /TR=SW:Q09418 /GB=CAA86781.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063920 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-209) (tag-209) mRNA, complete cds. 11/11 None
SNAP00000015427 ENSEMBL cdna:SNAP chromosome:CEL140:II:10787301:10787762:1 11/11 None
GENEFINDER00000015440 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10787301:10787762:1 11/11 None
R06F6.11 ENSEMBL cdna:known chromosome:CEL140:II:10787301:10787830:1 gene:R06F6.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10787297-10787759(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-209
Ensembl R06F6.11
Entrez Gene 174660 Entrez gene
SwissProt Q09418 EMBL-EBI
WormBase CE01617 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86781 Hypothetical protein R06F6.11 [Caenorhabditis elegans] ref|NP_496321.1| Temporarily Assigned Gene name family member (tag-209) [Caenorhabditis elegans] sp|Q09418|YRMB_CAEEL Hypothetical protein R06F6.11 in chromosome II precursor 2.0E-40
blast CAE59606 Hypothetical protein CBG03014 [Caenorhabditis briggsae] 5.0E-30
Sequence
Target Sequence 
>C. ELEGANS:187447_AT
atgttgaaactactcgctttcgtcgctcttttgtccgtttctgtcagtgccaacgtggat
atgaccggtttcggtcttccagccgacaatcacaaggttgcactcggaggtccgatccag
gaatctgcagggcttgctgacgaaggagaacaacagctccaacttgtcgacgtgagccca
caagacgagggacaacagaatgtggctcatgttagagaaatgttctccaacgtgttcaac
agcatcaagacccaacgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTGAAACTACTCGCTTTCGTCG 307 47 13 Antisense
GTTTCTGTCAGTGCCAACGTGGATA 456 449 49 Antisense
TATGACCGGTTTCGGTCTTCCAGCC 709 653 72 Antisense
TCTTCCAGCCGACAATCACAAGGTT 397 617 87 Antisense
TCACAAGGTTGCACTCGGAGGTCCG 41 627 102 Antisense
TCGGAGGTCCGATCCAGGAATCTGC 546 599 116 Antisense
GGAATCTGCAGGGCTTGCTGACGAA 341 533 132 Antisense
ACAACAGCTCCAACTTGTCGACGTG 653 111 162 Antisense
TGTCGACGTGAGCCCACAAGACGAG 710 553 177 Antisense
AGAAATGTTCTCCAACGTGTTCAAC 32 73 228 Antisense
TCAACAGCATCAAGACCCAACGCGA 702 629 248 Antisense
Sequence Source Affymetrix Proprietary Database