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[187446_s_at]

Description F15G9.1A /REP_DB=WormBase Gene ID /WP=CE01549 /TR=SW:Q10033 /GB=CAA87331.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 75      6grp_total > 94      4grp_total > 42      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 437
1 2 3 4 range
A 434.8
(-3)
P 		809.8
(3)
P 		565.1
(-0.9)
P 		433.7
(-3)
P 		376
B 372.7
(-3)
P 		686.9
(3)
P 		677
(2.8)
P 		465.1
(-1.2)
P 		314
C 407.5
(-2.9)
P 		716.1
(3)
P 		514.1
(-0.8)
P 		400.8
(-3)
P 		315
avr 405
(-3) 		737.6
(3) 		585.4
(0.3) 		433.2
(-2.5) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 479
1 2 3 4 5 6 range
A 894.6
(0.2)
P 		674.3
(-3)
P 		873.5
(-0.1)
P 		1087
(3)
P 		1068.2
(2.7)
P 		878.5
(-0)
P 		413
B 973.3
(0.5)
P 		728
(-3)
P 		842.8
(-1.4)
P 		958.4
(0.3)
P 		1153.2
(3)
P 		1011.9
(1)
P 		425
C 803.1
(-1.5)
P 		745.6
(-2.5)
P 		719.8
(-3)
P 		993.8
(1.9)
P 		1057.2
(3)
P 		985.8
(1.7)
P 		337
avr 890.3
(-0.2) 		716
(-3) 		812
(-1.5) 		1013.1
(1.7) 		1092.9
(3) 		958.7
(0.9) 		377
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 158.3
(2.1)
P 		175.8
(3)
P 		147.7
(1.5)
P 		63.5
(-3)
P 		112
B 118.8
(-1.3)
P 		169.6
(3)
P 		156.9
(1.9)
P 		99.1
(-3)
P 		71
C 134.9
(-0.1)
P 		205.9
(3)
P 		179.2
(1.8)
P 		67.6
(-3)
P 		138
avr 137.3
(0.4) 		183.8
(3) 		161.3
(1.7) 		76.7
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 164.9
(-3)
P 		239.8
(-0.1)
P 		190.2
(-2)
P 		275.7
(1.2)
P 		322.3
(3)
P 		213.9
(-1.1)
P 		157
B 338.7
(0)
P 		242.3
(-2.1)
P 		204.6
(-3)
P 		253.9
(-1.9)
P 		468.5
(3)
P 		377.3
(0.9)
P 		264
C 297.7
(1.3)
P 		227.5
(-1.3)
P 		183.2
(-3)
P 		199.9
(-2.4)
P 		342.1
(3)
P 		330
(2.5)
P 		159
avr 267.1
(-0.6) 		236.5
(-1.6) 		192.7
(-3) 		243.2
(-1.4) 		377.6
(3) 		307.1
(0.7) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187446_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16758
Sequence Type Exemplar sequence
Representative Public ID F15G9.1A NCBI
Target Description F15G9.1A /REP_DB=WormBase Gene ID /WP=CE01549 /TR=SW:Q10033 /GB=CAA87331.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077231(11), NM_077230(11), NM_182440(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077231 NCBI Caenorhabditis elegans F15G9.1b (F15G9.1) mRNA, complete cds. 11/11 None
NM_077230 NCBI Caenorhabditis elegans F15G9.1a (F15G9.1) mRNA, complete cds. 11/11 None
NM_182440 NCBI Caenorhabditis elegans F15G9.1c (F15G9.1) mRNA, complete cds. 11/11 None
SNAP00000012491 ENSEMBL cdna:SNAP chromosome:CEL140:X:9706958:9708349:1 11/11 None
GENEFINDER00000012502 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9706958:9708349:1 11/11 None
F15G9.1b ENSEMBL cdna:known chromosome:CEL140:X:9705575:9708349:1 gene:F15G9.1 11/11 None
F15G9.1a ENSEMBL cdna:known chromosome:CEL140:X:9706938:9708479:1 gene:F15G9.1 11/11 A 
F15G9.1c ENSEMBL cdna:known chromosome:CEL140:X:9706958:9708349:1 gene:F15G9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9706957-9708349(+) 100.0 100.0
Public Domain and Genome References
Ensembl F15G9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87331 Hypothetical protein F15G9.1a [Caenorhabditis elegans] ref|NP_509631.1| F15G9.1a [Caenorhabditis elegans] sp|Q10033|YSI1_CAEEL Hypothetical protein F15G9.1 in chromosome X 2.0E-90
blast CAD56568 Hypothetical protein F15G9.1c [Caenorhabditis elegans] ref|NP_872240.1| F15G9.1c [Caenorhabditis elegans] 1.0E-89
blast CAD56568 Hypothetical protein F15G9.1c [Caenorhabditis elegans] ref|NP_872240.1| F15G9.1c [Caenorhabditis elegans] 6.0E-88
blast CAA87331 Hypothetical protein F15G9.1a [Caenorhabditis elegans] ref|NP_509631.1| F15G9.1a [Caenorhabditis elegans] sp|Q10033|YSI1_CAEEL Hypothetical protein F15G9.1 in chromosome X 6.0E-88
Sequence
Target Sequence 
>C. ELEGANS:187446_S_AT
ggacgagatcgaggagctctcctacgacgctaagactccaaccactccaactgaggagac
cgtcgatgctcctcgtgaggttcttcaagagagccagatctctgactttgtcgaggagga
cgacgatcagcaaaccgaagttgaggaggtcaagctgactctcgcaagcgagcctgagga
gtcagaagaggaggaggacgacgaagacgttcgcaaagctcaggagcttcttgctgccag
cactcaaattcgtgagagctctccagtctcttcaccagtcaaggaggtttcttctgctgc
ttcgttgtttgccaatgacaacggaaacgagactgaaaaccgcacgccaagcccaactgt
gttgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGAGATCGAGGAGCTCTCCTAC 141 525 267 Antisense
GACTCCAACCACTCCAACTGAGGAG 430 297 300 Antisense
TCGATGCTCCTCGTGAGGTTCTTCA 27 603 329 Antisense
GAGAGCCAGATCTCTGACTTTGTCG 274 395 355 Antisense
TCAAGCTGACTCTCGCAAGCGAGCC 306 631 416 Antisense
AAGACGTTCGCAAAGCTCAGGAGCT 476 153 470 Antisense
CTTGCTGCCAGCACTCAAATTCGTG 233 219 496 Antisense
AAATTCGTGAGAGCTCTCCAGTCTC 34 117 512 Antisense
TCCAGTCTCTTCACCAGTCAAGGAG 162 589 528 Antisense
AGTCAAGGAGGTTTCTTCTGCTGCT 627 61 543 Antisense
CACGCCAAGCCCAACTGTGTTGAAC 91 201 609 Antisense
Sequence Source Affymetrix Proprietary Database