[Home] | [Total List]

[187445_s_at]

Description H13N06.5 /REP_DB=WormBase Gene ID /WP=CE18815 /TR=SW:Q9XTQ7 /GB=CAB17070.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 10      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 13      6grp_total > 32      4grp_total > 49      6grp_cgc > 60      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2149
1 2 3 4 range
A 2907.6
(-3)
P 		4474.8
(1.7)
P 		4895.2
(3)
P 		2906.3
(-3)
P 		1989
B 2745.9
(-3)
P 		3666.1
(1.8)
P 		3907.9
(3)
P 		3293
(-0.2)
P 		1162
C 2926.6
(-3)
P 		3629.1
(3)
P 		3539.5
(2.2)
P 		3026.4
(-2.1)
P 		703
avr 2860
(-3) 		3923.3
(2.1) 		4114.2
(3) 		3075.2
(-2) 		1254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1776
1 2 3 4 5 6 range
A 3373.9
(3)
P 		2723.1
(0.3)
P 		3150.6
(2.1)
P 		3218.1
(2.4)
P 		2543.5
(-0.5)
P 		1930.2
(-3)
P 		1444
B 2678.6
(0.7)
P 		2938.7
(1.9)
P 		3185.8
(3)
P 		3128.9
(2.7)
P 		2471
(-0.3)
P 		1875.4
(-3)
P 		1310
C 2954.9
(2.2)
P 		2632.7
(0.9)
P 		3176.9
(3)
P 		2561.1
(0.7)
P 		2615.5
(0.9)
P 		1598.3
(-3)
P 		1579
avr 3002.5
(2.3) 		2764.8
(1.2) 		3171.1
(3) 		2969.4
(2.1) 		2543.3
(0.3) 		1801.3
(-3) 		1370
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 854
1 2 3 4 range
A 1058.6
(1.4)
P 		971.4
(0.8)
P 		1279.7
(3)
P 		425.4
(-3)
P 		854
B 875.6
(2.1)
P 		905.4
(3)
P 		905.6
(3)
P 		701.7
(-3)
P 		204
C 968.8
(0.8)
P 		1043.4
(1.4)
P 		1233.6
(3)
P 		510.3
(-3)
P 		723
avr 967.7
(1.3) 		973.4
(1.3) 		1139.6
(3) 		545.8
(-3) 		594

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 625
1 2 3 4 5 6 range
A 621.9
(-1.2)
P 		968.5
(3)
P 		686.1
(-0.4)
P 		816.2
(1.2)
P 		767.5
(0.6)
P 		469.9
(-3)
P 		499
B 932
(1.6)
P 		978.2
(2.5)
P 		773.6
(-1.5)
P 		828.7
(-0.5)
P 		1004
(3)
P 		699.3
(-3)
P 		305
C 1095.2
(3)
P 		803.3
(-0)
P 		808.6
(0)
P 		515
(-3)
P 		846.3
(0.4)
P 		535
(-2.8)
P 		580
avr 883
(2.4) 		916.7
(3) 		756.1
(0.2) 		720
(-0.4) 		872.6
(2.2) 		568.1
(-3) 		349
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187445_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17804
Sequence Type Exemplar sequence
Representative Public ID H13N06.5 NCBI
Target Description H13N06.5 /REP_DB=WormBase Gene ID /WP=CE18815 /TR=SW:Q9XTQ7 /GB=CAB17070.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078162 NCBI Caenorhabditis elegans H13N06.5 (H13N06.5) mRNA, complete cds. 11/11 A 
SNAP00000006583 ENSEMBL cdna:SNAP chromosome:CEL140:X:15506121:15507782:-1 11/11 None
GENEFINDER00000006588 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15506121:15507798:-1 11/11 None
H13N06.5 ENSEMBL cdna:known chromosome:CEL140:X:15505959:15507941:-1 gene:H13N06.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15506120-15507941(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H13N06.5
Entrez Gene 181640 Entrez gene
WormBase CE38718 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260003_AT IAA-alanine resistance protein 1, putative at
CANINE_2:CFA.18787.1.S1_S_AT similar to Zinc transporter SLC39A7 (Solute carrier family 39 member 7) (Histidine-rich membrane protein Ke4) cfa
CANINE_2:CFAAFFX.2291.1.S1_AT similar to Zinc transporter SLC39A7 (Solute carrier family 39 member 7) (Histidine-rich membrane protein Ke4) cfa
DROSOPHILA_2:1627458_AT Catecholamines up dm
DROSGENOME1:154165_AT Catecholamines up dm
HG-U133_PLUS_2:202667_S_AT solute carrier family 39 (zinc transporter), member 7 hs
HG-FOCUS:202667_S_AT solute carrier family 39 (zinc transporter), member 7 hs
HG-U133A_2:202667_S_AT solute carrier family 39 (zinc transporter), member 7 hs
HG-U133A:202667_S_AT solute carrier family 39 (zinc transporter), member 7 hs
HUGENEFL:D82060_AT solute carrier family 39 (zinc transporter), member 7 hs
U133_X3P:G5901935_3P_A_AT solute carrier family 39 (zinc transporter), member 7 hs
HG-U95AV2:40329_AT solute carrier family 39 (zinc transporter), member 7 hs
MOE430A:1416949_S_AT solute carrier family 39 (zinc transporter), member 7 mm
MOUSE430A_2:1416949_S_AT solute carrier family 39 (zinc transporter), member 7 mm
MOUSE430_2:1416949_S_AT solute carrier family 39 (zinc transporter), member 7 mm
MU11KSUBA:M32010_S_AT solute carrier family 39 (zinc transporter), member 7 mm
MG-U74AV2:103371_AT solute carrier family 39 (zinc transporter), member 7 mm
MU19KSUBA:TC24718_S_AT Solute carrier family 39 (zinc transporter), member 7 (Slc39a7), mRNA mm
RG-U34B:RC_AI013750_AT RT1 class I, locus Ke4 rn
RAE230A:1389089_AT RT1 class I, locus Ke4 rn
RAT230_2:1389089_AT RT1 class I, locus Ke4 rn
Protein Similarities
Method ID Description E-Value
blast Q9XTQ7 Hypothetical Ke4-like protein H13N06.5 in chromosome X 1.0E-157
blast Q9XTQ7 Hypothetical Ke4-like protein H13N06.5 in chromosome X 1.0E-145
blast CAB17070 Hypothetical protein H13N06.5 [Caenorhabditis elegans] ref|NP_510563.2| H13N06.5 [Caenorhabditis elegans] 1.0E-143
blast Q9XTQ7 Hypothetical Ke4-like protein H13N06.5 in chromosome X 1.0E-143
blast CAE63324 Hypothetical protein CBG07716 [Caenorhabditis briggsae] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 2.4E-110
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 2.4E-110
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 2.4E-110
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510563.2 7 157-179,191-213,245-267,331-353,376-398,411-433,438-460
H13N06.5 9 15-37,49-71,210-232,244-266,298-320,384-406,429-451,464-486,491-513
SNAP00000006583 7 157-179,191-213,245-267,331-353,376-398,411-433,438-460
GENEFINDER00000006588 8 7-26,163-185,197-219,251-273,337-359,382-404,417-439,444-466
Sequence
Target Sequence 
>C. ELEGANS:187445_S_AT
atcgccttcttgaccgttgagaaactcgtgcgcattttgagaggagaagacggccatggt
cactcacatggacattcccatggaggggagaagaaggaaaccaaggaaaaggattcgaag
gacaaagttgccaagaaggaggagaaaccagaaaaagacgagcaatcaatcaaggttacc
gcctacctcaacctcgctgctgatttcacccacaacttcactgacggacttgccatcgga
gcgtccttcattgcgggaaccaccgtcggaatcgttactatgatcacagttcttgtccat
gaggttcctcacgagattggagatttcgccattctgattcaatctggatactctaagaag
aaggccatgctcatccaacttgtaactgctctcggagcactttccggatgtgtcatctcc
ttgttctctgctgacgccgatgctctcgccgacgctgcggctagctcctgggttcttcca
ttcacagccggaggattcatctacattgctacggtttccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCCTTCTTGACCGTTGAGAAAC 557 35 934 Antisense
AGGAGAAGACGGCCATGGTCACTCA 454 55 975 Antisense
TCAATCAAGGTTACCGCCTACCTCA 536 633 1099 Antisense
ACAACTTCACTGACGGACTTGCCAT 277 113 1145 Antisense
CATTGCGGGAACCACCGTCGGAATC 244 215 1182 Antisense
ACAGTTCTTGTCCATGAGGTTCCTC 499 107 1219 Antisense
TGGAGATTTCGCCATTCTGATTCAA 481 549 1251 Antisense
AAGAAGAAGGCCATGCTCATCCAAC 58 153 1288 Antisense
CTCATCCAACTTGTAACTGCTCTCG 194 229 1303 Antisense
GAGCACTTTCCGGATGTGTCATCTC 511 389 1328 Antisense
TCATCTACATTGCTACGGTTTCCGT 344 619 1430 Antisense
Sequence Source Affymetrix Proprietary Database