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[187444_at]

Description R13F6.8 /REP_DB=WormBase Gene ID /WP=CE00795 /TR=SW:Q21984 /GB=AAC47048.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 10.3
(-2.5)
A 		7.8
(-3)
A 		7.6
(-3)
A 		41
(3)
A 		33
B 35.2
(3)
A 		19.6
(-0)
A 		13.1
(-1.3)
A 		4.3
(-3)
A 		31
C 10.9
(-1.5)
A 		8.2
(-2)
A 		2.8
(-3)
A 		34.9
(3)
A 		32
avr 18.8
(0.5) 		11.9
(-1.7) 		7.8
(-3) 		26.7
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 22.2
(3)
A 		19.8
(2.2)
A 		12.2
(-0.2)
A 		13.5
(0.3)
A 		16.6
(1.2)
A 		3.2
(-3)
A 		19
B 31
(1.4)
A 		10.2
(-1.8)
A 		30.5
(1.3)
A 		41.5
(3)
A 		31
(1.4)
A 		2.4
(-3)
A 		39
C 3
(-2.8)
A 		13.3
(-0.3)
A 		27.4
(3)
A 		10.4
(-1)
A 		8.1
(-1.6)
A 		2
(-3)
A 		25
avr 18.7
(1.7) 		14.4
(0.4) 		23.4
(3) 		21.8
(2.5) 		18.6
(1.6) 		2.5
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.7
(-0.2)
A 		1.7
(-3)
A 		2
(-2.6)
A 		6
(3)
A 		4
B 11.2
(3)
A 		4.8
(-0.7)
A 		3
(-1.8)
A 		0.9
(-3)
A 		10
C 3.6
(0.2)
A 		2.4
(-1.3)
A 		1
(-3)
A 		5.9
(3)
A 		5
avr 6.2
(3) 		3
(-1.6) 		2
(-3) 		4.3
(0.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.1
(0.2)
A 		7
(3)
A 		2.7
(-1.2)
A 		3.4
(-0.5)
A 		5
(1.1)
A 		0.8
(-3)
A 		6
B 10.8
(2.1)
A 		3.4
(-1.7)
A 		7.4
(0.3)
A 		11
(2.2)
A 		12.6
(3)
A 		0.9
(-3)
A 		12
C 1.1
(-2.6)
A 		4.1
(0.2)
A 		7
(3)
A 		2.1
(-1.7)
A 		2.6
(-1.2)
A 		0.7
(-3)
A 		6
avr 5.3
(1.6) 		4.8
(1.1) 		5.7
(2) 		5.5
(1.8) 		6.7
(3) 		0.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187444_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7377
Sequence Type Exemplar sequence
Representative Public ID R13F6.8 NCBI
Target Description R13F6.8 /REP_DB=WormBase Gene ID /WP=CE00795 /TR=SW:Q21984 /GB=AAC47048.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066090(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066090 NCBI Caenorhabditis elegans R13F6.8 (R13F6.8) mRNA, complete cds. 11/11 None
SNAP00000003262 ENSEMBL cdna:SNAP chromosome:CEL140:III:6858726:6859504:-1 11/11 None
GENEFINDER00000003270 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6858726:6859504:-1 11/11 None
R13F6.8 ENSEMBL cdna:known chromosome:CEL140:III:6858726:6859504:-1 gene:R13F6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6858724-6859503(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13F6.8
Entrez Gene 187871 Entrez gene
SwissProt Q21984 EMBL-EBI
WormBase CE00795 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498491 R13F6.8 [Caenorhabditis elegans] gb|AAC47048.1| Hypothetical protein R13F6.8 [Caenorhabditis elegans] sp|Q21984|YNQ8_CAEEL Hypothetical protein R13F6.8 in chromosome III precursor 1.0E-122
blast NP_498492 R13F6.2 [Caenorhabditis elegans] gb|AAC47042.2| Hypothetical protein R13F6.2 [Caenorhabditis elegans] sp|Q21985|YNQ2_CAEEL Hypothetical protein R13F6.2 in chromosome III 5.0E-98
blast T16749 hypothetical protein R13F6.2 - Caenorhabditis elegans 1.0E-80
Sequence
Target Sequence 
>C. ELEGANS:187444_AT
tttcagcgtttgttgtggctctcgttgcagccgactgtgccctgaaatgtccagatggct
acttttcattcaaaagagctccatcagccaagaactcgatgactggattgtggtgtgtca
aggcaattttgtctgacactcttatctcaccaaatcaagccaaacaagtttgtgaaaaag
atggatcaatcctgacatcatttgagaatcttgatgagcgtaccaaacttgccactgttc
ttcgtgatttcctttctgccaagaaattggatcgtggaggaatgattgttgatggacatc
gtttgaagaactgcgagactgacgatagaactgttttgaatgccgaaccatgcagaaact
catccactgggtttactactgatgagaagcacactgataatacattcatgtggaagagct
gggctgatactgaaccaggacaatccatctttgagaaacaaatcgaatcttgcctccaac
tcgcaatttctcaattcaaatcccgcactgaactgatcaatgacgtcttctgtaactatg
taaagcatccacaaaatgaaggtgcttacgatctctggaacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCAGCGTTTGTTGTGGCTCTCGT 637 671 29 Antisense
CCGACTGTGCCCTGAAATGTCCAGA 585 263 59 Antisense
ATGTCCAGATGGCTACTTTTCATTC 318 47 75 Antisense
AGAGCTCCATCAGCCAAGAACTCGA 154 69 103 Antisense
CTGACACTCTTATCTCACCAAATCA 269 239 161 Antisense
TCGTGATTTCCTTTCTGCCAAGAAA 142 605 270 Antisense
GCCGAACCATGCAGAAACTCATCCA 189 285 370 Antisense
AACTCATCCACTGGGTTTACTACTG 271 139 385 Antisense
GAACCAGGACAATCCATCTTTGAGA 698 345 460 Antisense
TTTCTCAATTCAAATCCCGCACTGA 505 671 515 Antisense
AAGGTGCTTACGATCTCTGGAACTA 571 159 587 Antisense
Sequence Source Affymetrix Proprietary Database