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[187443_at]

Description Y57E12AL.2 /REP_DB=WormBase Gene ID /WP=CE22640 /TR=Q9N338 /GB=AAF59615.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 53      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9.7
(3)
A 		4.1
(-1.4)
A 		6.6
(0.6)
A 		2.1
(-3)
A 		8
B 2.3
(-3)
A 		4.8
(0.1)
A 		7.1
(3)
A 		6.4
(2.1)
A 		5
C 7
(1.6)
A 		8.7
(3)
A 		1.5
(-3)
A 		3.1
(-1.7)
A 		7
avr 6.3
(3) 		5.9
(2) 		5.1
(-0) 		3.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 9.8
(-1.8)
A 		3.1
(-3)
A 		4.2
(-2.8)
A 		4.9
(-2.7)
A 		6.7
(-2.4)
A 		36.6
(3)
A 		34
B 5.4
(-2)
A 		25
(3)
A 		6.3
(-1.8)
A 		2.2
(-2.8)
A 		6.4
(-1.8)
A 		1.6
(-3)
A 		23
C 8.3
(-1.6)
A 		10.5
(-1)
A 		3
(-3)
A 		25
(3)
A 		15.5
(0.4)
A 		4.2
(-2.7)
A 		22
avr 7.8
(-0.9) 		12.9
(2.3) 		4.5
(-3) 		10.7
(0.9) 		9.5
(0.1) 		14.1
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.5
(3)
A 		0.9
(-1.9)
A 		1.7
(-0.4)
A 		0.3
(-3)
A 		3
B 0.7
(-3)
A 		1.2
(0)
A 		1.7
(3)
A 		1.4
(1.2)
A 		1
C 2.3
(2.4)
A 		2.5
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		2
avr 2.2
(3) 		1.5
(0.2) 		1.3
(-0.6) 		0.7
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.8
(-2.3)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		1.3
(-2.7)
A 		2
(-2.2)
A 		8.9
(3)
A 		8
B 1.9
(-2)
A 		8.3
(3)
A 		1.5
(-2.3)
A 		0.6
(-3)
A 		2.6
(-1.4)
A 		0.6
(-3)
A 		8
C 3.1
(0.3)
A 		3.2
(0.4)
A 		0.8
(-3)
A 		5
(3)
A 		5
(3)
A 		1.4
(-2.1)
A 		4
avr 2.3
(-0.7) 		4.2
(3) 		1.1
(-3) 		2.3
(-0.7) 		3.2
(1.1) 		3.6
(1.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187443_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11399
Sequence Type Exemplar sequence
Representative Public ID Y57E12AL.2 NCBI
Target Description Y57E12AL.2 /REP_DB=WormBase Gene ID /WP=CE22640 /TR=Q9N338 /GB=AAF59615.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072389 NCBI Caenorhabditis elegans Y57E12AL.2 (Y57E12AL.2) mRNA, complete cds. 11/11 None
SNAP00000039555 ENSEMBL cdna:SNAP chromosome:CEL140:V:7060772:7061100:1 9/11 None
Y57E12AL.2 ENSEMBL cdna:known chromosome:CEL140:V:7060688:7061100:1 gene:Y57E12AL.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039561 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7060688-7061101(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57E12AL.2
Entrez Gene 190355 Entrez gene
SwissProt Q9N338 EMBL-EBI
WormBase CE22640 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59615 Hypothetical protein Y57E12AL.2 [Caenorhabditis elegans] ref|NP_504790.1| Y57E12AL.2 [Caenorhabditis elegans] 2.0E-56
blast AAF59615 Hypothetical protein Y57E12AL.2 [Caenorhabditis elegans] ref|NP_504790.1| Y57E12AL.2 [Caenorhabditis elegans] 8.0E-40
blast CAE71993 Hypothetical protein CBG19069 [Caenorhabditis briggsae] 6.0E-26
Sequence
Target Sequence 
>C. ELEGANS:187443_AT
atcaaaacatcaacctctacgagaaattactataaaatcagggtgggagaggggaaaacc
caactgaaccgaaccatgttcaagcatttttctgtatttgctcttctagctgttgttgct
tttgccaatcgtaatccggagcaaatgaaatctgaaatgcttgctgcaggagtttcagct
gccggtgtagctacgatttccaccttcatggagactcataaaccacaaagaggagctaac
cgtgaaacaggaaaagccgagtttgatgctatgcttgccactctcactgtagccgatcgc
actgctttccagaaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAAAACATCAACCTCTACGAGAA 1 27 22 Antisense
GAACCATGTTCAAGCATTTTTCTGT 65 347 92 Antisense
ATTTTTCTGTATTTGCTCTTCTAGC 580 15 107 Antisense
GCTCTTCTAGCTGTTGTTGCTTTTG 64 301 121 Antisense
GTTGCTTTTGCCAATCGTAATCCGG 140 439 136 Antisense
GAAATGCTTGCTGCAGGAGTTTCAG 588 361 175 Antisense
GAGTTTCAGCTGCCGGTGTAGCTAC 363 399 191 Antisense
GGTGTAGCTACGATTTCCACCTTCA 196 495 205 Antisense
GATTTCCACCTTCATGGAGACTCAT 632 425 216 Antisense
GCCGAGTTTGATGCTATGCTTGCCA 693 283 277 Antisense
CGATCGCACTGCTTTCCAGAAAGTG 18 249 315 Antisense
Sequence Source Affymetrix Proprietary Database