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[187441_at]

Description Y110A2AL.2 /REP_DB=WormBase Gene ID /WP=CE24115 /TR=Q9N497 /GB=AAF60400.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 26      6grp_total > 04      4grp_total > 46      6grp_high1_sub > De      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 147.9
(-1)
P 		160.7
(1.4)
A 		136.8
(-3)
A 		169.3
(3)
A 		33
B 150.6
(3)
P 		97.7
(-3)
A 		124.6
(0.1)
A 		108.4
(-1.8)
A 		53
C 167.2
(3)
P 		155.1
(1.7)
A 		134.7
(-0.5)
P 		112.2
(-3)
P 		55
avr 155.2
(3) 		137.8
(-1.1) 		132
(-2.5) 		130
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 160
(3)
A 		143.8
(2.2)
P 		103.4
(0.3)
P 		74.2
(-1.1)
P 		97.2
(0)
P 		33
(-3)
A 		127
B 156.4
(0.4)
P 		199.6
(3)
P 		99.7
(-3)
A 		99.6
(-3)
A 		100.6
(-2.9)
P 		110.6
(-2.3)
P 		100
C 159.6
(3)
P 		135
(1.5)
P 		124.7
(0.8)
A 		154.9
(2.7)
M 		97
(-0.9)
P 		62.5
(-3)
A 		97
avr 158.7
(2.9) 		159.5
(3) 		109.3
(-0.3) 		109.6
(-0.3) 		98.3
(-1) 		68.7
(-3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 53.9
(3)
P 		34.9
(-0.9)
A 		35.8
(-0.7)
A 		24.8
(-3)
A 		29
B 48
(3)
P 		24.1
(-2.8)
A 		28.9
(-1.6)
A 		23.1
(-3)
A 		25
C 55.3
(3)
P 		44.6
(1.2)
A 		46.9
(1.6)
P 		18.9
(-3)
P 		36
avr 52.4
(3) 		34.5
(-0.6) 		37.2
(-0) 		22.3
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 29.5
(-0)
A 		51.2
(3)
P 		22.5
(-1)
P 		18.8
(-1.5)
P 		29.3
(-0)
P 		8
(-3)
A 		43
B 54.4
(1.3)
P 		66.4
(3)
P 		24.2
(-3)
A 		26.4
(-2.7)
A 		40.9
(-0.6)
P 		41.2
(-0.6)
P 		42
C 59.2
(3)
P 		41.2
(0.2)
P 		31.7
(-1.3)
A 		31.1
(-1.4)
M 		31.4
(-1.4)
P 		20.9
(-3)
A 		38
avr 47.7
(1.9) 		52.9
(3) 		26.1
(-2.5) 		25.4
(-2.6) 		33.9
(-0.9) 		23.4
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187441_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5602
Sequence Type Exemplar sequence
Representative Public ID Y110A2AL.2 NCBI
Target Description Y110A2AL.2 /REP_DB=WormBase Gene ID /WP=CE24115 /TR=Q9N497 /GB=AAF60400.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061987(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061987 NCBI Caenorhabditis elegans Y110A2AL.2 (Y110A2AL.2) mRNA, complete cds. 11/11 None
SNAP00000036289 ENSEMBL cdna:SNAP chromosome:CEL140:II:2868999:2874554:1 10/11 None
GENEFINDER00000036300 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2867352:2870757:1 11/11 None
Y110A2AL.2 ENSEMBL cdna:known chromosome:CEL140:II:2867992:2870818:1 gene:Y110A2AL.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2868012-2870716(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A2AL.2
Entrez Gene 190935 Entrez gene
SwissProt Q9N497 EMBL-EBI
WormBase CE32073 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60400 Hypothetical protein Y110A2AL.2 [Caenorhabditis elegans] ref|NP_494388.2| Y110A2AL.2 [Caenorhabditis elegans] 0.0
blast AAF60402 Hypothetical protein Y110A2AL.3 [Caenorhabditis elegans] ref|NP_494387.1| Y110A2AL.3 [Caenorhabditis elegans] 1.0E-44
blast AAB37924 Hypothetical protein F08D12.3a [Caenorhabditis elegans] ref|NP_494363.1| F08D12.3a [Caenorhabditis elegans] 6.0E-26
blast AAB37924 Hypothetical protein F08D12.3a [Caenorhabditis elegans] ref|NP_494363.1| F08D12.3a [Caenorhabditis elegans] 8.0E-26
blast AAB37924 Hypothetical protein F08D12.3a [Caenorhabditis elegans] ref|NP_494363.1| F08D12.3a [Caenorhabditis elegans] 2.0E-25
blast AAB37928 Hypothetical protein F08D12.3b [Caenorhabditis elegans] ref|NP_494361.2| F08D12.3b [Caenorhabditis elegans] 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR007026 EMBL-EBI CC domain 1.5E-16
Pfam IPR007026 EMBL-EBI CC domain 9.9E-18
Pfam IPR007026 EMBL-EBI CC domain 1.6E-16
Pfam IPR007026 EMBL-EBI CC domain 2.9E-16
Pfam IPR007026 EMBL-EBI CC domain 1.7E-14
Pfam IPR007026 EMBL-EBI CC domain 2.1E-16
Pfam IPR007026 EMBL-EBI CC domain 1.3E-15
Pfam IPR007026 EMBL-EBI CC domain 4.9E-17
Pfam IPR007026 EMBL-EBI CC domain 4.5E-16
Pfam IPR007026 EMBL-EBI CC domain 4.9E-17
Pfam IPR007026 EMBL-EBI CC domain 0.0050
Pfam IPR007026 EMBL-EBI CC domain 2.9E-16
Pfam IPR007026 EMBL-EBI CC domain 1.7E-14
Pfam IPR007026 EMBL-EBI CC domain 2.1E-16
Pfam IPR007026 EMBL-EBI CC domain 1.3E-15
Pfam IPR007026 EMBL-EBI CC domain 4.9E-17
Pfam IPR007026 EMBL-EBI CC domain 4.5E-16
Pfam IPR007026 EMBL-EBI CC domain 3.5E-17
Pfam IPR007026 EMBL-EBI CC domain 0.0050
Pfam IPR007026 EMBL-EBI CC domain 2.1E-15
Pfam IPR007026 EMBL-EBI CC domain 0.78
Pfam IPR007026 EMBL-EBI CC domain 1.5E-16
Pfam IPR007026 EMBL-EBI CC domain 9.9E-18
Pfam IPR007026 EMBL-EBI CC domain 1.6E-16
Pfam IPR007026 EMBL-EBI CC domain 2.9E-16
Pfam IPR007026 EMBL-EBI CC domain 1.7E-14
Pfam IPR007026 EMBL-EBI CC domain 2.1E-16
Pfam IPR007026 EMBL-EBI CC domain 1.3E-15
Pfam IPR007026 EMBL-EBI CC domain 4.9E-17
Pfam IPR007026 EMBL-EBI CC domain 4.5E-16
Pfam IPR007026 EMBL-EBI CC domain 4.9E-17
Pfam IPR007026 EMBL-EBI CC domain 0.0050
Sequence
Target Sequence 
>C. ELEGANS:187441_AT
atttgattgatggctcttcctccaacagaacccaaacctgccggggtccaaccaaggctc
caacaatgggaagatgctggtctgatgacgtcatggtcgagggaaaccggtgctgtgcta
agagggatgtgtctgaaaactccgccaccctagcctgcaagaaatccaccagaaccccta
acttccgtggagaatgccgctctgatgacgtcatggtcagcggaaaccgctgctgtgaaa
aggaagatgtttatgacccctcaactgctacctgtgagccaagacgtggcactgctcacc
cagttttgggaatggctatcaatggagagtgccccagaaattacctggtcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGATTGATGGCTCTTCCTCCAA 129 19 1241 Antisense
TCCAACAGAACCCAAACCTGCCGGG 465 585 1261 Antisense
GTCGAGGGAAACCGGTGCTGTGCTA 429 471 1336 Antisense
GGGATGTGTCTGAAAACTCCGCCAC 540 495 1364 Antisense
CACCCTAGCCTGCAAGAAATCCACC 454 95 1386 Antisense
GAACCCCTAACTTCCGTGGAGAATG 168 347 1412 Antisense
CGTGGAGAATGCCGCTCTGATGACG 652 243 1426 Antisense
GGAAGATGTTTATGACCCCTCAACT 365 531 1482 Antisense
TCAACTGCTACCTGTGAGCCAAGAC 653 627 1501 Antisense
GCACTGCTCACCCAGTTTTGGGAAT 146 315 1529 Antisense
GTGCCCCAGAAATTACCTGGTCACC 681 477 1569 Antisense
Sequence Source Affymetrix Proprietary Database