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[187439_at]

Description C16C10.4 /REP_DB=WormBase Gene ID /WP=CE01495 /TR=SW:Q09250 /GB=CAA86742.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 68      6grp_total > 96      4grp_total > 58      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 748
1 2 3 4 range
A 1288.9
(-2.9)
P 		1607.3
(2.2)
P 		1660.1
(3)
P 		1284.9
(-3)
P 		375
B 1539.7
(0.9)
P 		1725.1
(2.4)
P 		1795.2
(3)
P 		1047.7
(-3)
P 		748
C 1383.3
(-1.5)
P 		1726.7
(3)
P 		1545.2
(0.6)
P 		1272.3
(-3)
P 		454
avr 1404
(-0.5) 		1686.4
(3) 		1666.8
(2.8) 		1201.6
(-3) 		485

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 983
1 2 3 4 5 6 range
A 1894.5
(1.7)
P 		1403.7
(-3)
P 		1786.3
(0.7)
P 		1634
(-0.8)
P 		2026.8
(3)
P 		1924.4
(2)
P 		623
B 1579.9
(-2)
P 		1441.3
(-3)
P 		1641.8
(-1.5)
P 		1855.7
(0)
P 		2261.8
(3)
P 		2193.6
(2.5)
P 		821
C 1278.5
(-3)
P 		1602.8
(-1)
P 		1646.6
(-0.7)
P 		1841.9
(0.5)
P 		1742.6
(-0.1)
P 		2254.2
(3)
P 		976
avr 1584.3
(-2) 		1482.6
(-3) 		1691.6
(-1) 		1777.2
(-0.2) 		2010.4
(1.9) 		2124.1
(3) 		642
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 469.3
(3)
P 		348.9
(0.4)
P 		434
(2.2)
P 		188.1
(-3)
P 		281
B 491
(3)
P 		426.1
(1.5)
P 		416
(1.3)
P 		223.3
(-3)
P 		268
C 457.9
(1.5)
P 		496.4
(2.2)
P 		538.6
(3)
P 		214.5
(-3)
P 		324
avr 472.7
(3) 		423.8
(1.9) 		462.9
(2.8) 		208.6
(-3) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 570
1 2 3 4 5 6 range
A 349.2
(-3)
P 		499.2
(0.4)
P 		389
(-2.1)
P 		414.4
(-1.5)
P 		611.6
(3)
P 		468.5
(-0.3)
P 		262
B 549.7
(-1.3)
P 		479.8
(-2.1)
P 		398.7
(-3)
P 		491.5
(-1.9)
P 		918.9
(3)
P 		818
(1.8)
P 		520
C 473.9
(-1.4)
P 		489.1
(-1.1)
P 		419.1
(-2.2)
P 		370.4
(-3)
P 		563.9
(0)
P 		754.6
(3)
P 		384
avr 457.6
(-1.9) 		489.4
(-1.2) 		402.3
(-3) 		425.4
(-2.5) 		698.1
(3) 		680.4
(2.6) 		296
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187439_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6313
Sequence Type Exemplar sequence
Representative Public ID C16C10.4 NCBI
Target Description C16C10.4 /REP_DB=WormBase Gene ID /WP=CE01495 /TR=SW:Q09250 /GB=CAA86742.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065432(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065432 NCBI Caenorhabditis elegans C16C10.4 (C16C10.4) mRNA, complete cds. 11/11 None
SNAP00000043774 ENSEMBL cdna:SNAP chromosome:CEL140:III:4171311:4172036:1 11/11 None
GENEFINDER00000043781 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4171311:4172036:1 11/11 None
C16C10.4 ENSEMBL cdna:known chromosome:CEL140:III:4171307:4172151:1 gene:C16C10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4171310-4172036(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C10.4
Entrez Gene 175534 Entrez gene
SwissProt Q09250 EMBL-EBI
WormBase CE01495 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.4066.1.A1_S_AT similar to sin3 associated polypeptide p18 cfa
Protein Similarities
Method ID Description E-Value
blast CAA86742 Hypothetical protein C16C10.4 [Caenorhabditis elegans] ref|NP_497833.1| C16C10.4 [Caenorhabditis elegans] sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subunit SAP18 (Sin3-associated polypeptide, 18 kDa) 1.0E-93
blast CAE72856 Hypothetical protein CBG20155 [Caenorhabditis briggsae] 5.0E-60
blast XP_532294 PREDICTED: similar to sin3 associated polypeptide p18 [Canis familiaris] 2.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR010516 EMBL-EBI Sin3 associated polypeptide p18 3.7E-122
Sequence
Target Sequence 
>C. ELEGANS:187439_AT
atgagcaacggtcaactcgtgtctcaggtgacagttggtcacgataaaccattagatcgt
gagaaagtatgtccgatgcttcttcgcgtcttcgttgctaataatcgtcataatccgatg
agcgagtacaatagtagaaatggaggatctgttccacccagcgaacttcaaatgcatact
tggatggactgttctctgcgtgaattgaccagtctaatcaaagaagtgaatccggacgct
agaagaaagggcaccacattcgatttcgctattgtgcaggcagaccgcggctcgccaaga
tacattctacgcgatgtgggaaacacgacgaatggagagcgtggcattgatgacaacaaa
actctacaacaatgcaaattcgaagtcggtgatttcgtcgacgtcgcgatttccttgcca
agtcaaggacgtcgtttcaataaccgggagcagggagaccgtttcgatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGCAACGGTCAACTCGTGTCTC 359 25 13 Antisense
AAAGTATGTCCGATGCTTCTTCGCG 649 121 76 Antisense
TTCTTCGCGTCTTCGTTGCTAATAA 71 691 92 Antisense
AAATGGAGGATCTGTTCCACCCAGC 75 121 150 Antisense
TCCACCCAGCGAACTTCAAATGCAT 425 589 165 Antisense
TACTTGGATGGACTGTTCTCTGCGT 312 645 189 Antisense
GAAAGGGCACCACATTCGATTTCGC 378 359 257 Antisense
GATTTCGCTATTGTGCAGGCAGACC 619 427 274 Antisense
GGCTCGCCAAGATACATTCTACGCG 413 537 301 Antisense
AAGTCGGTGATTTCGTCGACGTCGC 630 157 395 Antisense
GGAGCAGGGAGACCGTTTCGATCAT 139 519 459 Antisense
Sequence Source Affymetrix Proprietary Database