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[187438_s_at]

Description B0361.9 /REP_DB=WormBase Gene ID /WP=CE00838 /TR=SW:Q10952 /GB=AAK18868.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 44      6grp_total > 72      4grp_total > 04      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1330
1 2 3 4 range
A 554.7
(-2.8)
P 		521.7
(-3)
P 		714.7
(-1.9)
P 		1616.2
(3)
P 		1095
B 799.9
(-1.5)
P 		481.9
(-3)
P 		541.6
(-2.7)
P 		1780.4
(3)
P 		1299
C 756.7
(-1.4)
P 		461.6
(-2.9)
P 		450.2
(-3)
P 		1586.6
(3)
P 		1136
avr 703.8
(-1.9) 		488.4
(-3) 		568.8
(-2.6) 		1661.1
(3) 		1173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1210
1 2 3 4 5 6 range
A 946.8
(-3)
P 		2029.1
(2.4)
P 		1754.2
(1)
P 		2156.3
(3)
P 		1753.5
(1)
P 		1108.2
(-2.2)
P 		1210
B 1197.8
(-1.6)
P 		1544.7
(0.3)
P 		2037.5
(3)
P 		2005.1
(2.8)
P 		1587.6
(0.5)
P 		953.4
(-3)
P 		1084
C 1208.2
(-2.1)
P 		1631.7
(0.5)
P 		2033.1
(3)
P 		1926.7
(2.3)
P 		1571.1
(0.2)
P 		1059.3
(-3)
P 		974
avr 1117.6
(-2.5) 		1735.2
(1.2) 		1941.6
(2.5) 		2029.4
(3) 		1637.4
(0.6) 		1040.3
(-3) 		989
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 202
(1.3)
P 		113.2
(-3)
P 		186.8
(0.6)
P 		236.6
(3)
P 		123
B 255.1
(0.1)
P 		119
(-3)
P 		125.5
(-2.9)
P 		379.4
(3)
P 		260
C 250.5
(2.2)
P 		132.7
(-3)
P 		156.9
(-1.9)
P 		267.5
(3)
P 		135
avr 235.9
(1) 		121.6
(-3) 		156.4
(-1.8) 		294.5
(3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 547
1 2 3 4 5 6 range
A 174.5
(-3)
P 		721.7
(3)
P 		382
(-0.7)
P 		546.9
(1.1)
P 		529.1
(0.9)
P 		269.8
(-2)
P 		547
B 416.8
(-1.7)
P 		514.2
(0.3)
P 		494.8
(-0.1)
P 		531.1
(0.6)
P 		645
(3)
P 		355.5
(-3)
P 		290
C 447.8
(0.4)
P 		497.9
(2.3)
P 		517.5
(3)
P 		387.5
(-1.8)
P 		508.4
(2.7)
P 		354.6
(-3)
P 		163
avr 346.4
(-2.5) 		577.9
(3) 		464.8
(0.3) 		488.5
(0.9) 		560.8
(2.6) 		326.6
(-3) 		251
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187438_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6736
Sequence Type Exemplar sequence
Representative Public ID B0361.9 NCBI
Target Description B0361.9 /REP_DB=WormBase Gene ID /WP=CE00838 /TR=SW:Q10952 /GB=AAK18868.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066207(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066207 NCBI Caenorhabditis elegans B0361.9 (B0361.9) mRNA, complete cds. 11/11 None
SNAP00000011054 ENSEMBL cdna:SNAP chromosome:CEL140:III:7298610:7299402:-1 11/11 None
GENEFINDER00000011065 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7298610:7299402:-1 11/11 None
B0361.9 ENSEMBL cdna:known chromosome:CEL140:III:7298289:7299522:-1 gene:B0361.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7298607-7299400(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0361.9
Entrez Gene 176033 Entrez gene
SwissProt Q10952 EMBL-EBI
WormBase CE00838 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18868 Hypothetical protein B0361.9 [Caenorhabditis elegans] ref|NP_498608.1| B0361.9 [Caenorhabditis elegans] sp|Q10952|YMP9_CAEEL Hypothetical protein B0361.9 in chromosome III precursor 6.0E-80
blast CAE69295 Hypothetical protein CBG15350 [Caenorhabditis briggsae] 4.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 2.8E-21
Sequence
Target Sequence 
>C. ELEGANS:187438_S_AT
tcaattgctctgttgtcttgcacaacactatgtgcagctaccactgaatggtggggagac
cttcgtgcacatctcaatccagctcgtcaagcaccattctatgatgtaacctatgacgag
aaagttaacgtctgtccacaaggacttcacgcagatgctattcctgagtatgtctacttc
ggaacaatgcttgcaacaatgactgttgatgagcacgatcaatgtctccagaagtgcgcc
gaaaagccacgttgcaaagcagtcaacttcttccatccatttgcatatcaggagaaaggt
ttttgcgagttgctcactgaaggacaactcgacaatccatcattgatgcgcccattccgc
aaagctacttattacgagaaaattcgttgccgtgagcttgatgatgttgaggacgttgaa
gaggcagcaccaatcggctcggaaatcacagaaaagcttccagaagacatggctcgcgag
aagaaactcgacatgagcaagttgatgaagaagctttccgccaaggttaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTGCTCTGTTGTCTTGCACAA 645 633 25 Antisense
ACAACACTATGTGCAGCTACCACTG 169 113 46 Antisense
AGCTCGTCAAGCACCATTCTATGAT 287 81 105 Antisense
GGACTTCACGCAGATGCTATTCCTG 336 525 166 Antisense
GAAGTGCGCCGAAAAGCCACGTTGC 88 337 255 Antisense
TGCAAAGCAGTCAACTTCTTCCATC 355 577 277 Antisense
CTTCTTCCATCCATTTGCATATCAG 544 221 291 Antisense
AATCCATCATTGATGCGCCCATTCC 522 167 358 Antisense
AATTCGTTGCCGTGAGCTTGATGAT 618 177 405 Antisense
TGAAGAGGCAGCACCAATCGGCTCG 346 575 441 Antisense
GAAGAAGCTTTCCGCCAAGGTTAAG 12 339 531 Antisense
Sequence Source Affymetrix Proprietary Database