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[187435_at]

Description F52H2.6 /REP_DB=WormBase Gene ID /WP=CE10874 /TR=SW:O17397 /GB=AAB71310.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 41      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 156.1
(-3)
A 		208.4
(2.5)
A 		213.4
(3)
A 		166.7
(-1.9)
A 		57
B 133.5
(1)
M 		151.8
(3)
A 		107.8
(-1.9)
M 		98.2
(-3)
A 		54
C 145.9
(-3)
P 		182.7
(0.7)
M 		199.7
(2.5)
P 		204.8
(3)
A 		59
avr 145.2
(-3) 		181
(3) 		173.6
(1.8) 		156.6
(-1.1) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 138.8
(-0.5)
P 		204.5
(3)
P 		153.8
(0.3)
P 		91.3
(-3)
A 		150.4
(0.1)
A 		106.1
(-2.2)
A 		113
B 97.2
(-2.3)
A 		220.1
(3)
P 		139.8
(-0.5)
P 		81.3
(-3)
A 		114.5
(-1.6)
P 		94.3
(-2.4)
P 		139
C 162.8
(2.7)
P 		169.3
(3)
P 		138.9
(1.5)
M 		45.9
(-3)
A 		54
(-2.6)
A 		99.3
(-0.4)
A 		123
avr 132.9
(-0.1) 		198
(3) 		144.2
(0.4) 		72.8
(-3) 		106.3
(-1.4) 		99.9
(-1.7) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 56.8
(3)
A 		45.2
(0.9)
A 		55.8
(2.8)
A 		24.4
(-3)
A 		32
B 42.6
(3)
M 		37.5
(1.6)
A 		25
(-1.9)
M 		20.9
(-3)
A 		22
C 48.3
(-0.6)
P 		52.5
(0.1)
M 		69.6
(3)
P 		34.5
(-3)
A 		35
avr 49.2
(2.8) 		45.1
(1.7) 		50.1
(3) 		26.6
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 25.6
(-2.7)
P 		72.7
(3)
P 		33.5
(-1.7)
P 		23.1
(-3)
A 		45.4
(-0.3)
A 		25.8
(-2.7)
A 		50
B 33.8
(-1.6)
A 		73.3
(3)
P 		33.9
(-1.6)
P 		21.5
(-3)
A 		46.5
(-0.1)
P 		35.2
(-1.4)
P 		52
C 60.3
(3)
P 		51.7
(2)
P 		35.4
(0.1)
M 		9.2
(-3)
A 		17.5
(-2)
A 		33.2
(-0.2)
A 		51
avr 39.9
(-0.3) 		65.9
(3) 		34.3
(-1) 		17.9
(-3) 		36.5
(-0.7) 		31.4
(-1.3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187435_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18161
Sequence Type Exemplar sequence
Representative Public ID F52H2.6 NCBI
Target Description F52H2.6 /REP_DB=WormBase Gene ID /WP=CE10874 /TR=SW:O17397 /GB=AAB71310.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076062(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076062 NCBI Caenorhabditis elegans F52H2.6 (F52H2.6) mRNA, complete cds. 11/11 None
SNAP00000036208 ENSEMBL cdna:SNAP chromosome:CEL140:X:2560113:2564139:-1 11/11 None
GENEFINDER00000036215 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2560113:2564139:-1 11/11 None
F52H2.6 ENSEMBL cdna:known chromosome:CEL140:X:2559721:2564139:-1 gene:F52H2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2560112-2564139(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52H2.6
Entrez Gene 186134 Entrez gene
SwissProt O17397 EMBL-EBI
WormBase CE10874 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15146_S_AT cell elongation protein / DWARF1 / DIMINUTO (DIM) at
ATH1-121501:257938_AT cell elongation protein / DWARF1 / DIMINUTO (DIM) at
CANINE_2:CFA.18313.1.S1_AT similar to 24-dehydrocholesterol reductase precursor cfa
CANINE_2:CFAAFFX.29006.1.S1_S_AT similar to 24-dehydrocholesterol reductase precursor cfa
CHICKEN:GGAAFFX.12935.1.S1_S_AT 24-dehydrocholesterol reductase gga
HG-U95AV2:36658_AT 24-dehydrocholesterol reductase hs
HG-U133_PLUS_2:200862_AT 24-dehydrocholesterol reductase hs
HG-U133A:200862_AT 24-dehydrocholesterol reductase hs
HG-FOCUS:200862_AT 24-dehydrocholesterol reductase hs
HG-U133A_2:200862_AT 24-dehydrocholesterol reductase hs
HUGENEFL:D13643_AT 24-dehydrocholesterol reductase hs
U133_X3P:G13375617_3P_AT 24-dehydrocholesterol reductase hs
HG-U95D:74557_S_AT 24-dehydrocholesterol reductase hs
HG-U95D:76380_AT 24-dehydrocholesterol reductase hs
MOUSE430_2:1451895_A_AT 24-dehydrocholesterol reductase mm
MOUSE430A_2:1451895_A_AT 24-dehydrocholesterol reductase mm
MOE430A:1451895_A_AT 24-dehydrocholesterol reductase mm
MOUSE430A_2:1418129_AT 24-dehydrocholesterol reductase mm
MOE430A:1418129_AT 24-dehydrocholesterol reductase mm
MOUSE430_2:1418129_AT 24-dehydrocholesterol reductase mm
MOE430A:1418130_AT 24-dehydrocholesterol reductase mm
MOUSE430A_2:1418130_AT 24-dehydrocholesterol reductase mm
MOUSE430_2:1418130_AT 24-dehydrocholesterol reductase mm
MG-U74AV2:160369_AT 24-dehydrocholesterol reductase, mRNA (cDNA clone MGC:30547 IMAGE:5054108) mm
MU19KSUBB:TC33362_AT 24-dehydrocholesterol reductase, mRNA (cDNA clone MGC:30547 IMAGE:5054108) mm
MU19KSUBB:TC33362_G_AT 24-dehydrocholesterol reductase, mRNA (cDNA clone MGC:30547 IMAGE:5054108) mm
MU19KSUBB:TC34773_AT 24-dehydrocholesterol reductase, mRNA (cDNA clone MGC:30547 IMAGE:5054108) mm
MU19KSUBC:TC36669_AT 24-dehydrocholesterol reductase, mRNA (cDNA clone MGC:30547 IMAGE:5054108) mm
RG-U34C:RC_AI102972_AT 24-dehydrocholesterol reductase (predicted) rn
RAE230A:1372012_AT 24-dehydrocholesterol reductase (predicted) rn
RAT230_2:1372012_AT 24-dehydrocholesterol reductase (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71310 Hypothetical protein F52H2.6 [Caenorhabditis elegans] ref|NP_508463.1| F52H2.6 [Caenorhabditis elegans] sp|O17397|DIML_CAEEL Diminuto-like protein 0.0
blast CAE58859 Hypothetical protein CBG02085 [Caenorhabditis briggsae] 0.0
blast XP_546693 PREDICTED: similar to 24-dehydrocholesterol reductase precursor isoform 1 [Canis familiaris] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR006094 EMBL-EBI FAD linked oxidase, N-terminal 6.1E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508463.1 1 23-45
F52H2.6 1 23-45
SNAP00000036208 1 23-45
GENEFINDER00000036215 1 23-45
Sequence
Target Sequence 
>C. ELEGANS:187435_AT
ttgagtacattccactccgtgactactaccatcgtcactcaaagagcattttctgggagc
tcagagacatcgtcccattcggaaacaatgtcctgtttcgttacttgatggcttggatgt
gccccccaaagattgcatttttaaaggcaacaactccaaacgttttaagaaagctgtacg
atcgtagtcatgttttgcaagatatgcttgtaccactggataagttggaagagtgcatcg
atctttttcacaaagaagtcgaaatctatccaatgtggttgtgcccattctacttgaaat
cccaaccaggtctcatgaaattgagaaatgctactcacaagatgtacgtggatgttggag
cgtatggagtaacatccaaggatggttatcatcacgagagaacaacacggcgactggaat
cgtttgttcgatcagtcaatggattccaaatgacatatgccgacatttacatgacacgag
ctgagtacgctgaaatgtttgacagaacactctatgattggaaaagagcatcttgcaaat
gtatcgatgcgttcccagatattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGTACATTCCACTCCGTGACTA 657 703 995 Antisense
ACTACTACCATCGTCACTCAAAGAG 571 101 1016 Antisense
GGGAGCTCAGAGACATCGTCCCATT 458 495 1049 Antisense
ATGTCCTGTTTCGTTACTTGATGGC 119 49 1082 Antisense
TACTTGATGGCTTGGATGTGCCCCC 362 645 1096 Antisense
ATGTGCCCCCCAAAGATTGCATTTT 590 49 1111 Antisense
GTACGATCGTAGTCATGTTTTGCAA 227 459 1170 Antisense
GGTTGTGCCCATTCTACTTGAAATC 39 507 1271 Antisense
ACTTGAAATCCCAACCAGGTCTCAT 291 97 1286 Antisense
CACGGCGACTGGAATCGTTTGTTCG 238 199 1400 Antisense
GTATCGATGCGTTCCCAGATATTTA 376 453 1535 Antisense
Sequence Source Affymetrix Proprietary Database