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[187434_at]

Description B0563.5 /REP_DB=WormBase Gene ID /WP=CE02443 /TR=SW:Q11081 /GB=AAA68318.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 42.3
(-1.6)
A 		3.5
(-3)
A 		3.3
(-3)
A 		173.1
(3)
P 		170
B 34.3
(-1.4)
A 		4
(-3)
A 		8.1
(-2.8)
A 		116.9
(3)
M 		113
C 30.5
(-2)
A 		32.3
(-1.9)
A 		8.4
(-3)
A 		138.2
(3)
P 		130
avr 35.7
(-1.7) 		13.3
(-2.7) 		6.6
(-3) 		142.7
(3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 7.2
(-3)
A 		49.9
(0.3)
A 		7.8
(-3)
A 		13.6
(-2.5)
A 		84.9
(3)
P 		21.8
(-1.9)
A 		78
B 21
(-3)
A 		30.9
(-2.3)
A 		28.6
(-2.5)
A 		46.3
(-1.2)
A 		107.4
(3)
P 		38.8
(-1.8)
A 		86
C 5.6
(-3)
A 		51.1
(1.6)
A 		22.7
(-1.3)
A 		45.2
(1)
A 		64.6
(3)
P 		29.4
(-0.6)
A 		59
avr 11.3
(-3) 		44
(-0.4) 		19.7
(-2.3) 		35
(-1.1) 		85.6
(3) 		30
(-1.5) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 15.4
(0.6)
A 		0.8
(-3)
A 		0.9
(-3)
A 		25.3
(3)
P 		25
B 10.9
(-0.5)
A 		1
(-3)
A 		1.9
(-2.8)
A 		24.9
(3)
M 		24
C 10.1
(-0.9)
A 		9.3
(-1.1)
A 		2.9
(-3)
A 		23.3
(3)
P 		20
avr 12.1
(-0.3) 		3.7
(-2.5) 		1.9
(-3) 		24.5
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 1.3
(-3)
A 		17.7
(1)
A 		1.7
(-2.9)
A 		3.5
(-2.5)
A 		25.6
(3)
P 		5.3
(-2)
A 		24
B 7.3
(-2.9)
A 		10.3
(-2.4)
A 		6.9
(-3)
A 		12.3
(-2.1)
A 		43.7
(3)
P 		14.5
(-1.8)
A 		37
C 2.1
(-3)
A 		15.6
(1.3)
A 		5.8
(-1.8)
A 		9.1
(-0.8)
A 		20.9
(3)
P 		9.8
(-0.5)
A 		19
avr 3.6
(-3) 		14.5
(-0.5) 		4.8
(-2.7) 		8.3
(-1.9) 		30.1
(3) 		9.9
(-1.6) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187434_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16294
Sequence Type Exemplar sequence
Representative Public ID B0563.5 NCBI
Target Description B0563.5 /REP_DB=WormBase Gene ID /WP=CE02443 /TR=SW:Q11081 /GB=AAA68318.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077141(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077141 NCBI Caenorhabditis elegans B0563.5 (B0563.5) mRNA, complete cds. 11/11 None
SNAP00000037330 ENSEMBL cdna:SNAP chromosome:CEL140:X:9146107:9147411:1 10/11 None
B0563.5 ENSEMBL cdna:known chromosome:CEL140:X:9146107:9147104:1 gene:B0563.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9146105-9147103(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0563.5
Entrez Gene 182039 Entrez gene
SwissProt Q11081 EMBL-EBI
WormBase CE02443 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68318 Hypothetical protein B0563.5 [Caenorhabditis elegans] ref|NP_509542.1| B0563.5 [Caenorhabditis elegans] sp|Q11081|YT65_CAEEL Hypothetical protein B0563.5 in chromosome X 6.0E-38
blast AAA68318 Hypothetical protein B0563.5 [Caenorhabditis elegans] ref|NP_509542.1| B0563.5 [Caenorhabditis elegans] sp|Q11081|YT65_CAEEL Hypothetical protein B0563.5 in chromosome X 7.0E-29
blast CAE57278 Hypothetical protein CBG00181 [Caenorhabditis briggsae] 6.0E-21
blast CAE57278 Hypothetical protein CBG00181 [Caenorhabditis briggsae] 4.0E-11
Sequence
Target Sequence 
>C. ELEGANS:187434_AT
gactagcacatcagtttactttaacgactactacaacagaagagcatcatccagcaaact
ggagctttgcatgagtccttcttcatcaaccatctcaaaaagtcattcattggatgaaat
tccagatgtttcagcacgccggcggcatccttctttaggctttcttgagttctcgaaaac
cgccaacttccgatcacgtcgcgacgctgtttttgaaccattgggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTAGCACATCAGTTTACTTTAAC 281 371 15 Antisense
TTACTTTAACGACTACTACAACAGA 324 681 30 Antisense
AGAAGAGCATCATCCAGCAAACTGG 105 75 52 Antisense
AACTGGAGCTTTGCATGAGTCCTTC 425 143 71 Antisense
TTGCATGAGTCCTTCTTCATCAACC 513 703 81 Antisense
TCAACCATCTCAAAAAGTCATTCAT 478 631 100 Antisense
GCATCCTTCTTTAGGCTTTCTTGAG 420 309 159 Antisense
TCTTTAGGCTTTCTTGAGTTCTCGA 127 615 166 Antisense
TTCTTGAGTTCTCGAAAACCGCCAA 93 689 176 Antisense
GATCACGTCGCGACGCTGTTTTTGA 610 421 206 Antisense
GACGCTGTTTTTGAACCATTGGGTA 220 381 217 Antisense
Sequence Source Affymetrix Proprietary Database