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[187433_at]

Description ZK1307.2 /REP_DB=WormBase Gene ID /WP=CE01691 /TR=SW:Q09360 /GB=CAA87430.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 53      6grp_highest_nonorm > 91      6grp_total > 54      4grp_total > 57      6grp_high1_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 372
1 2 3 4 range
A 55.4
(-2.3)
P 		318.1
(3)
P 		313.5
(2.9)
P 		18.3
(-3)
A 		300
B 58
(-2.1)
P 		248
(0.9)
P 		375.4
(3)
P 		3.7
(-3)
A 		372
C 85.5
(-2)
P 		287.8
(2)
P 		337.1
(3)
P 		34.8
(-3)
M 		302
avr 66.3
(-2.1) 		284.6
(1.9) 		342
(3) 		18.9
(-3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 110.3
(-3)
P 		241
(1.4)
P 		290.2
(3)
P 		177.2
(-0.8)
P 		143.1
(-1.9)
P 		149.8
(-1.7)
P 		180
B 127.4
(-3)
P 		241.9
(0)
P 		355
(3)
P 		167.1
(-2)
P 		234.7
(-0.2)
P 		232.6
(-0.2)
P 		228
C 121
(-3)
P 		248.6
(3)
P 		165.9
(-0.9)
P 		199.2
(0.7)
P 		159.8
(-1.2)
P 		209
(1.1)
P 		128
avr 119.6
(-3) 		243.8
(1.9) 		270.4
(3) 		181.2
(-0.5) 		179.2
(-0.6) 		197.1
(0.1) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 20.2
(-1.7)
P 		69
(2)
P 		82
(3)
P 		2.7
(-3)
A 		79
B 18.5
(-1.8)
P 		61.2
(1.2)
P 		87
(3)
P 		0.8
(-3)
A 		86
C 28.3
(-1.8)
P 		82.7
(1.1)
P 		117.5
(3)
P 		5.9
(-3)
M 		112
avr 22.3
(-1.8) 		71
(1.4) 		95.5
(3) 		3.1
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 20.3
(-3)
P 		85.7
(3)
P 		63.2
(0.9)
P 		45
(-0.7)
P 		43.2
(-0.9)
P 		36.5
(-1.5)
P 		65
B 44.3
(-3)
P 		80.5
(1.3)
P 		86.2
(1.9)
P 		44.3
(-3)
P 		95.4
(3)
P 		86.7
(2)
P 		51
C 44.8
(-2.2)
P 		75.9
(3)
P 		42.2
(-2.6)
P 		40.1
(-3)
P 		51.7
(-1.1)
P 		70
(2)
P 		36
avr 36.5
(-3) 		80.7
(3) 		63.9
(0.7) 		43.1
(-2.1) 		63.4
(0.7) 		64.4
(0.8) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187433_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3301
Sequence Type Exemplar sequence
Representative Public ID ZK1307.2 NCBI
Target Description ZK1307.2 /REP_DB=WormBase Gene ID /WP=CE01691 /TR=SW:Q09360 /GB=CAA87430.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063679(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063679 NCBI Caenorhabditis elegans ZK1307.2 (ZK1307.2) mRNA, complete cds. 11/11 None
SNAP00000021427 ENSEMBL cdna:SNAP chromosome:CEL140:II:9653076:9653782:-1 11/11 None
GENEFINDER00000021434 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9653076:9655320:-1 11/11 None
ZK1307.2 ENSEMBL cdna:known chromosome:CEL140:II:9653076:9653782:-1 gene:ZK1307.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9653072-9653779(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1307.2
Entrez Gene 191559 Entrez gene
SwissProt Q09360 EMBL-EBI
WormBase CE01691 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87437 Hypothetical protein ZK1307.1a [Caenorhabditis elegans] ref|NP_001022509.1| ZK1307.1a [Caenorhabditis elegans] sp|Q09359|YS11_CAEEL Hypothetical protein ZK1307.1 in chromosome II 1.0E-136
blast CAE57999 Hypothetical protein CBG01062 [Caenorhabditis briggsae] 1.0E-123
blast CAA87430 Hypothetical protein ZK1307.2 [Caenorhabditis elegans] ref|NP_496080.1| ZK1307.2 [Caenorhabditis elegans] sp|Q09360|YS12_CAEEL Hypothetical protein ZK1307.2 in chromosome II 1.0E-74
blast CAA87430 Hypothetical protein ZK1307.2 [Caenorhabditis elegans] ref|NP_496080.1| ZK1307.2 [Caenorhabditis elegans] sp|Q09360|YS12_CAEEL Hypothetical protein ZK1307.2 in chromosome II 1.0E-73
blast CAE58000 Hypothetical protein CBG01064 [Caenorhabditis briggsae] 1.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR003198 EMBL-EBI Amidinotransferase 1.4E-84
Sequence
Target Sequence 
>C. ELEGANS:187433_AT
gaacgatttcacaaacaactatggctatggaccattcggaataggacctacaaatggagg
atttgatagttatgggttttatagagacaagttctataattcaggacttcctccacttta
ttcatttgcttcttatcgtaattattatcacgaaatttcattccacaagaacaaatacgg
acagccagcgcctacggatttcgaaactttacagcaggaaagatacggaccatattacga
tggagtctggggatacgcggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGATTTCACAAACAACTATGGC 601 347 105 Antisense
CAACTATGGCTATGGACCATTCGGA 318 187 120 Antisense
GACCATTCGGAATAGGACCTACAAA 624 369 134 Antisense
ATAATTCAGGACTTCCTCCACTTTA 282 25 200 Antisense
CTCCACTTTATTCATTTGCTTCTTA 567 235 215 Antisense
TGCTTCTTATCGTAATTATTATCAC 600 577 231 Antisense
TTATCACGAAATTTCATTCCACAAG 154 679 249 Antisense
GAACAAATACGGACAGCCAGCGCCT 179 353 273 Antisense
CCAGCGCCTACGGATTTCGAAACTT 633 271 289 Antisense
GAAAGATACGGACCATATTACGATG 396 353 322 Antisense
CGATGGAGTCTGGGGATACGCGGAT 371 249 342 Antisense
Sequence Source Affymetrix Proprietary Database