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[187432_at]

Description R10E11.6 /REP_DB=WormBase Gene ID /WP=CE00308 /TR=SW:P34550 /GB=CAA82351.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 57      4grp_high_8_8 > 26      6grp_highest_nonorm > 90      6grp_total > 58      4grp_total > 37      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 193.1
(1.9)
P 		205.7
(3)
P 		134.9
(-3)
M 		188.2
(1.5)
P 		71
B 201.5
(3)
P 		161.2
(-0.5)
P 		131.8
(-3)
P 		141.1
(-2.2)
P 		70
C 241.3
(3)
P 		135.9
(-1.4)
P 		96.7
(-3)
P 		192
(1)
P 		145
avr 212
(3) 		167.6
(0.1) 		121.1
(-3) 		173.8
(0.5) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 209.3
(2.9)
P 		153.7
(-0)
P 		142.4
(-0.6)
P 		97
(-3)
P 		153.1
(-0)
P 		210.6
(3)
P 		114
B 172.2
(0.2)
P 		133.7
(-3)
P 		175.6
(0.5)
P 		153.5
(-1.3)
P 		162
(-0.6)
P 		205
(3)
P 		71
C 192
(2.2)
P 		131.7
(-1.7)
P 		163.9
(0.4)
P 		112.2
(-3)
P 		130.8
(-1.8)
P 		204.4
(3)
P 		92
avr 191.2
(1.9) 		139.7
(-1.7) 		160.6
(-0.2) 		120.9
(-3) 		148.6
(-1.1) 		206.7
(3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 70.3
(3)
P 		44.6
(-0.6)
P 		35.3
(-1.9)
M 		27.5
(-3)
P 		43
B 64.2
(3)
P 		39.8
(-1.3)
P 		30.5
(-2.9)
P 		30.1
(-3)
P 		34
C 79.9
(3)
P 		39.1
(-2.2)
P 		33.7
(-2.8)
P 		32.4
(-3)
P 		48
avr 71.5
(3) 		41.2
(-1.4) 		33.2
(-2.5) 		30
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 38.6
(-0.2)
P 		54.7
(3)
P 		31
(-1.7)
P 		24.6
(-3)
P 		46.2
(1.3)
P 		51.3
(2.3)
P 		30
B 59.9
(0.2)
P 		44.5
(-2.4)
P 		42.6
(-2.7)
P 		40.7
(-3)
P 		65.8
(1.2)
P 		76.4
(3)
P 		36
C 71.2
(3)
P 		40.2
(-0.8)
P 		41.7
(-0.6)
P 		22.6
(-3)
P 		42.3
(-0.6)
P 		68.4
(2.7)
P 		49
avr 56.6
(1.5) 		46.5
(-0.1) 		38.4
(-1.5) 		29.3
(-3) 		51.4
(0.7) 		65.4
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187432_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7102
Sequence Type Exemplar sequence
Representative Public ID R10E11.6 NCBI
Target Description R10E11.6 /REP_DB=WormBase Gene ID /WP=CE00308 /TR=SW:P34550 /GB=CAA82351.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066766(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066766 NCBI Caenorhabditis elegans R10E11.6 (R10E11.6) mRNA, complete cds. 11/11 None
GENEFINDER00000016249 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9783223:9785702:1 11/11 None
SNAP00000016242 ENSEMBL cdna:SNAP chromosome:CEL140:III:9783483:9785702:1 11/11 None
R10E11.6 ENSEMBL cdna:known chromosome:CEL140:III:9783220:9785860:1 gene:R10E11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9783218-9785856(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10E11.6
Entrez Gene 3565637 Entrez gene
SwissProt P34550 EMBL-EBI
WormBase CE00308 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82351 Hypothetical protein R10E11.6 [Caenorhabditis elegans] ref|NP_499167.1| R10E11.6 [Caenorhabditis elegans] sp|P34550|YNJ6_CAEEL Hypothetical protein R10E11.6 in chromosome III 1.0E-180
blast CAA82351 Hypothetical protein R10E11.6 [Caenorhabditis elegans] ref|NP_499167.1| R10E11.6 [Caenorhabditis elegans] sp|P34550|YNJ6_CAEEL Hypothetical protein R10E11.6 in chromosome III 1.0E-178
blast CAA82351 Hypothetical protein R10E11.6 [Caenorhabditis elegans] ref|NP_499167.1| R10E11.6 [Caenorhabditis elegans] sp|P34550|YNJ6_CAEEL Hypothetical protein R10E11.6 in chromosome III 1.0E-162
blast CAE65133 Hypothetical protein CBG09999 [Caenorhabditis briggsae] 1.0E-152
blast CAE65133 Hypothetical protein CBG09999 [Caenorhabditis briggsae] 1.0E-136
blast XP_793684 PREDICTED: similar to AP1 gamma subunit binding protein 1 [Strongylocentrotus purpuratus] 4.0E-13
Sequence
Target Sequence 
>C. ELEGANS:187432_AT
cacttcttcatcatttgttccatttggaaaaatcaaaccatcagcgtttattccaacatc
gcttcttccacgtcgaagtatgagaaagaagaaagaatctgattcaaaagaagtttcagc
tcataactctccagccaagggagctgctcatgatttagcaggacttgattttggaagtga
tatatcgagtatgaaagaagaaattaaagatattaatgagacacccactcaatcatgttg
gagagaaactgttcatgcaatctatatagtcgtagaagaagctaatcaattatttaaaga
ttctaaaaaagaagtgattcaagagatttcggagacagagaagggttccgcgtatttcaa
aagtttatcaaaagcatttgatacattggaaagagtttgtaaatcagctggagttcaatt
atcagtacaatctaccaaggaagcagaatactgtagaaacttgcgacgaaaatgggaaac
ttttatggataccacaccggagcaaaatgtagaaatgactgatgatagaaaatgcgcaat
ttgctgtcaacctgttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTTCTTCATCATTTGTTCCATTT 206 197 471 Antisense
AATCAAACCATCAGCGTTTATTCCA 96 171 501 Antisense
GCGTTTATTCCAACATCGCTTCTTC 236 291 514 Antisense
TCGCTTCTTCCACGTCGAAGTATGA 12 599 529 Antisense
AAGTTTCAGCTCATAACTCTCCAGC 432 157 581 Antisense
CAGCCAAGGGAGCTGCTCATGATTT 294 203 602 Antisense
GAGACACCCACTCAATCATGTTGGA 175 393 688 Antisense
GAAACTGTTCATGCAATCTATATAG 634 357 715 Antisense
GACAGAGAAGGGTTCCGCGTATTTC 360 363 804 Antisense
TTATGGATACCACACCGGAGCAAAA 522 679 953 Antisense
CGCAATTTGCTGTCAACCTGTTCAA 28 255 1005 Antisense
Sequence Source Affymetrix Proprietary Database