[Home] | [Total List]

[187431_at]

Description C45G9.8 /REP_DB=WormBase Gene ID /WP=CE01859 /TR=SW:Q09280 /GB=AAA62551.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 10      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 14.3
(-3)
A 		20.8
(-2.2)
A 		29
(-1.1)
A 		60.7
(3)
P 		46
B 37.1
(-3)
A 		37.9
(-0.3)
A 		38.7
(2.3)
A 		38.9
(3)
A 		2
C 26.5
(-1.6)
A 		25.5
(-1.7)
A 		12.2
(-3)
A 		72.8
(3)
P 		61
avr 26
(-3) 		28.1
(-2.6) 		26.6
(-2.9) 		57.5
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 35.5
(0.9)
A 		5.5
(-3)
A 		51.8
(3)
P 		20.4
(-1.1)
A 		32.1
(0.4)
A 		45.8
(2.2)
A 		46
B 25.4
(1.6)
M 		3.8
(-2.7)
A 		2.3
(-3)
A 		17.1
(-0.1)
A 		21.9
(0.9)
A 		32.6
(3)
P 		30
C 9.9
(-2)
A 		28.9
(1.9)
A 		9.1
(-2.2)
A 		5.3
(-3)
A 		27
(1.5)
A 		34.2
(3)
P 		29
avr 23.6
(-0.4) 		12.7
(-3) 		21.1
(-1) 		14.3
(-2.6) 		27
(0.5) 		37.5
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5.2
(-2)
A 		4.5
(-3)
A 		7.6
(1.2)
A 		8.9
(3)
P 		4
B 11.8
(3)
A 		9.4
(-1.1)
A 		9
(-1.8)
A 		8.3
(-3)
A 		4
C 8.8
(0.4)
A 		7.3
(-0.8)
A 		4.3
(-3)
A 		12.3
(3)
P 		8
avr 8.6
(0.4) 		7.1
(-2.8) 		7
(-3) 		9.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.5
(-0.1)
A 		2
(-3)
A 		11.3
(3)
P 		5.2
(-0.9)
A 		9.7
(2)
A 		11.1
(2.9)
A 		9
B 8.8
(1.2)
M 		1.3
(-2.6)
A 		0.6
(-3)
A 		4.5
(-1)
A 		8.9
(1.3)
A 		12.2
(3)
P 		12
C 3.7
(-1.5)
A 		8.8
(1.5)
A 		2.3
(-2.3)
A 		1.1
(-3)
A 		8.7
(1.4)
A 		11.4
(3)
P 		10
avr 6.3
(-1) 		4
(-2.7) 		4.7
(-2.2) 		3.6
(-3) 		9.1
(1.1) 		11.6
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6639
Sequence Type Exemplar sequence
Representative Public ID C45G9.8 NCBI
Target Description C45G9.8 /REP_DB=WormBase Gene ID /WP=CE01859 /TR=SW:Q09280 /GB=AAA62551.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065672(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065672 NCBI Caenorhabditis elegans C45G9.8 (C45G9.8) mRNA, complete cds. 11/11 None
SNAP00000017855 ENSEMBL cdna:SNAP chromosome:CEL140:III:5050131:5052134:-1 11/11 None
GENEFINDER00000017866 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5050135:5052134:-1 11/11 None
C45G9.8 ENSEMBL cdna:known chromosome:CEL140:III:5050131:5054230:-1 gene:C45G9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5050129-5054229(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45G9.8
Entrez Gene 183480 Entrez gene
SwissProt Q09280 EMBL-EBI
WormBase CE01859 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498073 C45G9.8 [Caenorhabditis elegans] gb|AAA62551.1| Hypothetical protein C45G9.8 [Caenorhabditis elegans] sp|Q09280|YQI8_CAEEL Hypothetical protein C45G9.8 in chromosome III 0.0
blast NP_498073 C45G9.8 [Caenorhabditis elegans] gb|AAA62551.1| Hypothetical protein C45G9.8 [Caenorhabditis elegans] sp|Q09280|YQI8_CAEEL Hypothetical protein C45G9.8 in chromosome III 1.0E-142
blast NP_498073 C45G9.8 [Caenorhabditis elegans] gb|AAA62551.1| Hypothetical protein C45G9.8 [Caenorhabditis elegans] sp|Q09280|YQI8_CAEEL Hypothetical protein C45G9.8 in chromosome III 1.0E-139
blast AAB37735 Hypothetical protein C01G5.3 [Caenorhabditis elegans] ref|NP_500996.1| C01G5.3 [Caenorhabditis elegans] 4.0E-57
blast AAB37735 Hypothetical protein C01G5.3 [Caenorhabditis elegans] ref|NP_500996.1| C01G5.3 [Caenorhabditis elegans] 5.0E-57
blast AAF36054 Hypothetical protein Y75B7B.1 [Caenorhabditis elegans] ref|NP_503399.1| Y75B7B.1 [Caenorhabditis elegans] 8.0E-52
Sequence
Target Sequence 
>C. ELEGANS:187431_AT
gtcactaagaaaccatatccactgaagtataacaatgaaaaaggattgctgttattcgat
gaaagatcctcattctataagtcaagggaaaagaagaaggctgaaaaatctgaatctaat
ctagaagaagacacttatggacaagtaccaaagttgaaagatgttcagaggttgccaccg
cagaacgtgttcagccgtcctggagtaccgttttgggcagtcactttgttaccaacggag
gaggatttggttgacgttgatccatcaatatcagttggaactgaacatcttgaaatgtat
catttgaaacaagtaccacttcaaactatcaaaaaatcaaagttaatactcaatgcactt
caaccattgtctatattagaagatcgtgatgatattcatttcacgccggaacttgtattt
tcaaatacaattcgatcgcttgttcatgctcaggaaatggaaggaaaacgaaatgaaagt
aaatcagatgatgagggaaagtccgataagagtttgtcatttgtcattgagaagcaggaa
gagtttatttattcaagagcaaatccaatcgagacggctagaatggctcgtagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACTAAGAAACCATATCCACTGA 459 463 781 Antisense
AAAGGATTGCTGTTATTCGATGAAA 287 121 820 Antisense
GAAAGATCCTCATTCTATAAGTCAA 509 359 841 Antisense
TTCAGAGGTTGCCACCGCAGAACGT 159 687 944 Antisense
TGGAGTACCGTTTTGGGCAGTCACT 627 547 981 Antisense
GGCAGTCACTTTGTTACCAACGGAG 351 513 996 Antisense
GATTTGGTTGACGTTGATCCATCAA 56 427 1024 Antisense
GTTAATACTCAATGCACTTCAACCA 335 443 1122 Antisense
TTTCACGCCGGAACTTGTATTTTCA 704 671 1179 Antisense
TTCGATCGCTTGTTCATGCTCAGGA 288 695 1211 Antisense
GAGACGGCTAGAATGGCTCGTAGGA 11 393 1351 Antisense
Sequence Source Affymetrix Proprietary Database