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[187430_at]

Description K10D2.7 /REP_DB=WormBase Gene ID /WP=CE02019 /TR=SW:Q09412 /GB=AAA62545.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 31      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 73      6grp_total > 43      4grp_total > 03      6grp_high1_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1306
1 2 3 4 range
A 456
(-2.4)
P 		333.1
(-3)
P 		334.9
(-3)
P 		1637.6
(3)
P 		1305
B 575.8
(-1.8)
P 		362.7
(-2.8)
P 		331.9
(-3)
P 		1536.4
(3)
P 		1205
C 444.5
(-2.5)
P 		366.1
(-2.9)
P 		350
(-3)
P 		1569
(3)
P 		1219
avr 492.1
(-2.3) 		354
(-2.9) 		338.9
(-3) 		1581
(3) 		1242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 537
1 2 3 4 5 6 range
A 591.7
(0.2)
P 		384.4
(-2.1)
P 		840.3
(3)
P 		572.1
(0)
P 		543.5
(-0.3)
P 		303.4
(-3)
P 		537
B 579
(-0.8)
P 		671.2
(3)
P 		621.6
(1)
P 		533.8
(-2.7)
P 		664.2
(2.7)
P 		525.9
(-3)
P 		145
C 455.8
(-1.2)
P 		618.6
(3)
P 		415.3
(-2.3)
P 		387
(-3)
P 		509
(0.2)
P 		497.4
(-0.1)
P 		232
avr 542.2
(0.3) 		558.1
(0.8) 		625.7
(3) 		497.6
(-1.2) 		572.2
(1.3) 		442.2
(-3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 166
(0.4)
P 		72.3
(-3)
P 		87.5
(-2.5)
P 		239.7
(3)
P 		167
B 183.6
(-0.4)
P 		89.6
(-2.7)
P 		76.9
(-3)
P 		327.4
(3)
P 		251
C 147.2
(-1.4)
P 		105.2
(-3)
P 		122
(-2.4)
P 		264.6
(3)
P 		159
avr 165.6
(-0.6) 		89
(-3) 		95.5
(-2.8) 		277.2
(3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 109.1
(-1.1)
P 		136.7
(0.5)
P 		183
(3)
P 		145.1
(0.9)
P 		164
(2)
P 		73.9
(-3)
P 		109
B 201.5
(-0.2)
P 		223.4
(0.8)
P 		150.9
(-2.6)
P 		141.4
(-3)
P 		269.9
(3)
P 		196.1
(-0.4)
P 		129
C 168.9
(1.9)
P 		188.8
(3)
P 		105.7
(-1.5)
P 		77.8
(-3)
P 		164.7
(1.7)
P 		166.5
(1.8)
P 		111
avr 159.8
(-0) 		183
(1.7) 		146.5
(-1.1) 		121.4
(-3) 		199.5
(3) 		145.5
(-1.1) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187430_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6673
Sequence Type Exemplar sequence
Representative Public ID K10D2.7 NCBI
Target Description K10D2.7 /REP_DB=WormBase Gene ID /WP=CE02019 /TR=SW:Q09412 /GB=AAA62545.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065701(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065701 NCBI Caenorhabditis elegans K10D2.7 (K10D2.7) mRNA, complete cds. 11/11 None
K10D2.7 ENSEMBL cdna:known chromosome:CEL140:III:5196019:5196620:1 gene:K10D2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029363 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5196017-5196619(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10D2.7
Entrez Gene 187263 Entrez gene
SwissProt Q09412 EMBL-EBI
WormBase CE02019 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6790 sulfur metabolism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA62545 Hypothetical protein K10D2.7 [Caenorhabditis elegans] ref|NP_498102.1| K10D2.7 [Caenorhabditis elegans] sp|Q09412|YRJ7_CAEEL Hypothetical protein K10D2.7 in chromosome III 2.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR003749 EMBL-EBI ThiamineS 6.8E-20
Sequence
Target Sequence 
>C. ELEGANS:187430_AT
aagtgttatttttcggagaagcatgtcagctggtcggaaaaagagaagaagcgattgatt
ttcccgaagagaccgattatgaagagattcggaaaacaattttagaaaattacccagctc
ttcaaaaaattgaaaaggttatgatgctcgcagtggatcaggaatatgccaaccccggag
atcgtttcgaattggttcgcttcacagaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGTTATTTTTCGGAGAAGCATG 315 157 26 Antisense
GGAGAAGCATGTCAGCTGGTCGGAA 106 519 40 Antisense
GCATGTCAGCTGGTCGGAAAAAGAG 320 305 46 Antisense
AAGAAGCGATTGATTTTCCCGAAGA 505 151 71 Antisense
TTGATTTTCCCGAAGAGACCGATTA 447 705 80 Antisense
TAGAAAATTACCCAGCTCTTCAAAA 538 651 128 Antisense
GAAAAGGTTATGATGCTCGCAGTGG 120 355 157 Antisense
GATGCTCGCAGTGGATCAGGAATAT 135 415 168 Antisense
ATCAGGAATATGCCAACCCCGGAGA 30 25 182 Antisense
CAACCCCGGAGATCGTTTCGAATTG 193 185 195 Antisense
CGAATTGGTTCGCTTCACAGAAATC 135 253 213 Antisense
Sequence Source Affymetrix Proprietary Database