[Home] | [Total List]

[187429_s_at]

Description F31E3.4 /REP_DB=WormBase Gene ID /WP=CE01269 /TR=SW:P53015 /GB=AAA81687.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 85      6grp_total > 57      4grp_total > 15      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 308
1 2 3 4 range
A 695.8
(3)
P 		407.7
(-3)
P 		422.1
(-2.7)
P 		667.1
(2.4)
P 		288
B 630.8
(1.9)
P 		388.8
(-3)
P 		449.5
(-1.8)
P 		687.4
(3)
P 		299
C 616
(3)
P 		387.6
(-3)
P 		452.9
(-1.3)
P 		576.1
(2)
P 		228
avr 647.5
(3) 		394.7
(-3) 		441.5
(-1.9) 		643.5
(2.9) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 612
1 2 3 4 5 6 range
A 737.9
(-0.4)
P 		648.6
(-1.3)
P 		481.6
(-3)
P 		624.1
(-1.5)
P 		572.8
(-2.1)
P 		1064
(3)
P 		582
B 758.8
(-0.3)
P 		691.1
(-1)
P 		655.8
(-1.3)
P 		623.8
(-1.6)
P 		483.7
(-3)
P 		1093.8
(3)
P 		610
C 629.4
(-2)
P 		671.9
(-1.3)
P 		682.4
(-1.1)
P 		645.6
(-1.7)
P 		574.6
(-3)
P 		913.5
(3)
P 		339
avr 708.7
(-0.9) 		670.5
(-1.4) 		606.6
(-2.2) 		631.2
(-1.9) 		543.7
(-3) 		1023.8
(3) 		480
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 253.4
(3)
P 		88.5
(-3)
P 		110.3
(-2.2)
P 		97.7
(-2.7)
P 		165
B 201.1
(3)
P 		96
(-3)
P 		104.2
(-2.5)
P 		146.5
(-0.1)
P 		105
C 203.9
(3)
P 		111.4
(-2.2)
P 		157.8
(0.4)
P 		97.1
(-3)
P 		107
avr 219.5
(3) 		98.6
(-3) 		124.1
(-1.7) 		113.8
(-2.2) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 303
1 2 3 4 5 6 range
A 136
(-1.8)
P 		230.7
(1.9)
P 		104.9
(-3)
P 		158.3
(-0.9)
P 		172.8
(-0.4)
P 		259.1
(3)
P 		154
B 264
(-0.5)
P 		230
(-1.3)
P 		159.3
(-3)
P 		165.2
(-2.9)
P 		196.5
(-2.1)
P 		407.9
(3)
P 		249
C 233.3
(0.5)
P 		205
(-0.4)
P 		173.7
(-1.5)
P 		129.8
(-3)
P 		185.9
(-1.1)
P 		305.8
(3)
P 		176
avr 211.1
(-0.8) 		221.9
(-0.4) 		146
(-3) 		151.1
(-2.8) 		185.1
(-1.7) 		324.3
(3) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187429_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6194
Sequence Type Exemplar sequence
Representative Public ID F31E3.4 NCBI
Target Description F31E3.4 /REP_DB=WormBase Gene ID /WP=CE01269 /TR=SW:P53015 /GB=AAA81687.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066118(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066118 NCBI Caenorhabditis elegans F31E3.4 (F31E3.4) mRNA, complete cds. 11/11 None
GENEFINDER00000009467 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6963626:6968007:-1 11/11 None
SNAP00000009453 ENSEMBL cdna:SNAP chromosome:CEL140:III:6963843:6968007:-1 11/11 None
F31E3.4 ENSEMBL cdna:known chromosome:CEL140:III:6963554:6968045:-1 gene:F31E3.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6963840-6968005(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31E3.4
Entrez Gene 175974 Entrez gene
SwissProt P53015 EMBL-EBI
WormBase CE01269 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.12649.1.A1_AT similar to ubiquitin specific protease 52 cfa
CANINE_2:CFAAFFX.1153.1.S1_S_AT similar to ubiquitin specific protease 52 cfa
DROSOPHILA_2:1636801_AT dm
DROSGENOME1:154804_AT dm
CHICKEN:GGA.18769.1.S1_S_AT ubiquitin specific peptidase 52 gga
HG-U133_PLUS_2:203117_S_AT ubiquitin specific peptidase 52 hs
HG-U133A:203117_S_AT ubiquitin specific peptidase 52 hs
HG-U133A_2:203117_S_AT ubiquitin specific peptidase 52 hs
HU35KSUBA:RC_AA459939_AT ubiquitin specific peptidase 52 hs
HU35KSUBA:N24994_AT ubiquitin specific peptidase 52 hs
U133_X3P:G7662257_3P_A_AT ubiquitin specific peptidase 52 hs
HG-U95AV2:34801_AT ubiquitin specific peptidase 52 hs
MG-U74AV2:94397_AT ubiquitin specific peptidase 52 mm
MU11KSUBA:AA183544_S_AT ubiquitin specific peptidase 52 mm
MG-U74AV2:161556_AT ubiquitin specific peptidase 52 mm
MG-U74BV2:162815_AT ubiquitin specific peptidase 52 mm
MOE430A:1426700_A_AT ubiquitin specific peptidase 52 mm
MOUSE430A_2:1426700_A_AT ubiquitin specific peptidase 52 mm
MOUSE430_2:1426700_A_AT ubiquitin specific peptidase 52 mm
MU19KSUBC:TC37302_AT Ubiquitin specific peptidase 52, mRNA (cDNA clone IMAGE:3591885) mm
RG-U34B:RC_AA955628_AT ubiquitin specific protease 52 rn
RG-U34B:RC_AA955628_G_AT ubiquitin specific protease 52 rn
RAE230A:1389022_AT ubiquitin specific protease 52 rn
RAT230_2:1389022_AT ubiquitin specific protease 52 rn
RAE230B:1396591_AT ubiquitin specific protease 52 rn
RAT230_2:1396591_AT ubiquitin specific protease 52 rn
YEAST_2:1770802_AT Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes Sc
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4527 exonuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81687 Hypothetical protein F31E3.4 [Caenorhabditis elegans] ref|NP_498519.1| F31E3.4 [Caenorhabditis elegans] sp|P53015|YPO4_CAEEL Hypothetical protein F31E3.4 in chromosome III 0.0
blast CAE70056 Hypothetical protein CBG16490 [Caenorhabditis briggsae] 0.0
blast CAE56762 Hypothetical protein CBG24565 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006055 EMBL-EBI Exonuclease 1.1E-30
Sequence
Target Sequence 
>C. ELEGANS:187429_S_AT
atgagagcagttggtcgagcctcctgtgtcgactcgacaggcgaaaggatcatattcgac
gatcacgtgaagctcactgatgacgtagaagttgtcgactatctcacgaagtttagtgga
atcgtgaaagctgatctgtgtccaacgacttccgagaaatacttgacaacccacaagcgg
cttcttctacgaatgcatgttttgattcaacgaggagtcacatttgtaggacacgctctg
cataatgatttcacagtgctcaatgtgcatgtggcagaatcacagataatcgacacagtg
actctgatgcgtcttggcacccagagaatgttatcattgcagtttctggttaaggagatt
cttggcgaaactatacaaatggaagctcacgactcggtggttgatgcgagatatgcactg
aagctgtaccgaaaatatctggaaatcaaagagcaaggacttctgggttcagaaatgcgt
cgaatctacactattctcccgtgtccatcgccaaaccaaacatcgtcacctctggttgta
tctact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGAGCAGTTGGTCGAGCCTCCT 587 45 2806 Antisense
GAAAGCTGATCTGTGTCCAACGACT 535 359 2931 Antisense
TACTTGACAACCCACAAGCGGCTTC 456 643 2965 Antisense
AGCGGCTTCTTCTACGAATGCATGT 192 81 2981 Antisense
CACATTTGTAGGACACGCTCTGCAT 581 195 3024 Antisense
GACACAGTGACTCTGATGCGTCTTG 163 367 3097 Antisense
GGAAGCTCACGACTCGGTGGTTGAT 267 531 3186 Antisense
GATATGCACTGAAGCTGTACCGAAA 191 425 3215 Antisense
TGCGTCGAATCTACACTATTCTCCC 243 583 3281 Antisense
ATCGCCAAACCAAACATCGTCACCT 317 37 3312 Antisense
ATCGTCACCTCTGGTTGTATCTACT 437 35 3327 Antisense
Sequence Source Affymetrix Proprietary Database