[Home] | [Total List]

[187427_at]

Description B0244.5 /REP_DB=WormBase Gene ID /WP=CE02415 /TR=SW:Q10909 /GB=AAA68380.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 47      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 114.7
(3)
A 		53.3
(-0.6)
A 		57.2
(-0.4)
A 		13.1
(-3)
A 		102
B 114
(3)
P 		48.1
(-2.6)
A 		43.3
(-3)
A 		63.6
(-1.3)
A 		71
C 90.8
(3)
A 		35.2
(-3)
A 		40.1
(-2.5)
A 		63.2
(0)
A 		56
avr 106.5
(3) 		45.5
(-3) 		46.9
(-2.9) 		46.6
(-2.9) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 40.5
(-1.5)
A 		92.6
(3)
A 		22.6
(-3)
A 		65.8
(0.7)
A 		38.1
(-1.7)
A 		57.6
(0)
A 		70
B 52.9
(3)
A 		42.1
(0.6)
A 		51.6
(2.7)
A 		27.5
(-2.7)
A 		41.4
(0.4)
A 		26
(-3)
A 		27
C 49.7
(-0.7)
A 		57.7
(0.3)
A 		79.7
(3)
A 		30.4
(-3)
A 		34.9
(-2.5)
A 		41.4
(-1.7)
A 		49
avr 47.7
(-0.8) 		64.1
(3) 		51.3
(0) 		41.2
(-2.3) 		38.1
(-3) 		41.7
(-2.2) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 41.7
(3)
A 		11.6
(-1.5)
A 		14.9
(-1)
A 		1.9
(-3)
A 		40
B 36.3
(3)
P 		11.9
(-2.6)
A 		10
(-3)
A 		13.6
(-2.2)
A 		26
C 30
(3)
A 		10.1
(-3)
A 		14
(-1.8)
A 		10.6
(-2.8)
A 		20
avr 36
(3) 		11.2
(-2.5) 		13
(-2.1) 		8.7
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 7.5
(-2.4)
A 		32.9
(3)
A 		4.9
(-3)
A 		16.7
(-0.5)
A 		11.5
(-1.6)
A 		14
(-1.1)
A 		28
B 18.4
(3)
A 		14
(0.6)
A 		12.5
(-0.2)
A 		7.3
(-3)
A 		16.8
(2.1)
A 		9.7
(-1.7)
A 		11
C 18.4
(2.2)
A 		17.6
(1.9)
A 		20.3
(3)
A 		6.1
(-3)
A 		11.3
(-0.8)
A 		13.9
(0.3)
A 		14
avr 14.8
(-0.5) 		21.5
(3) 		12.6
(-1.6) 		10
(-3) 		13.2
(-1.3) 		12.5
(-1.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187427_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7873
Sequence Type Exemplar sequence
Representative Public ID B0244.5 NCBI
Target Description B0244.5 /REP_DB=WormBase Gene ID /WP=CE02415 /TR=SW:Q10909 /GB=AAA68380.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065841(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065841 NCBI Caenorhabditis elegans B0244.5 (B0244.5) mRNA, complete cds. 11/11 None
GENEFINDER00000016002 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5743557:5751585:1 11/11 None
B0244.5 ENSEMBL cdna:known chromosome:CEL140:III:5744907:5746997:1 gene:B0244.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015994 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5744905-5746996(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0244.5
Entrez Gene 181876 Entrez gene
WormBase CE38991 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68379 Hypothetical protein B0244.6 [Caenorhabditis elegans] ref|NP_498241.1| B0244.6 [Caenorhabditis elegans] sp|Q09965|YS96_CAEEL Putative G-protein coupled receptor B0244.6 1.0E-147
blast NP_498242 B0244.5 [Caenorhabditis elegans] sp|Q10909|YS95_CAEEL Hypothetical protein B0244.5 in chromosome III 1.0E-142
blast AAA68380 Hypothetical protein B0244.5 [Caenorhabditis elegans] 1.0E-137
blast NP_498242 B0244.5 [Caenorhabditis elegans] sp|Q10909|YS95_CAEEL Hypothetical protein B0244.5 in chromosome III 1.0E-113
blast AAA68380 Hypothetical protein B0244.5 [Caenorhabditis elegans] 1.0E-112
blast CAE64401 Hypothetical protein CBG09093 [Caenorhabditis briggsae] 1.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498242.1 6 21-43,78-100,105-127,137-159,171-193,224-241
B0244.5 6 21-43,78-100,105-127,137-159,171-193,224-241
GENEFINDER00000016002 15 20-42,62-84,97-119,134-165,187-209,288-310,330-352,372-391,404-426,449-471,500-522,553-570,591-613,776-798,827-849
Sequence
Target Sequence 
>C. ELEGANS:187427_AT
aatgctttccacaagtttcaccgtttattttttattttttctgattgacgatctgagttt
ctacagtcttcttggctcttatgttggctccacacttctcctgtaccttgcaactgtccg
accaattttctacagcattcagatttccgtgagaatcgtttataaatttgcgcttgtcaa
tgttcttctagcagttgtactagcgattggtaacttcacagttgacaactctgtatataa
atcagcacggacccgtcttgcatggacattattcacttttacattaattagtctcactga
aatgattccatcgtcttttctagtcaatctgcgagttgaggatacaattacaatatgcgt
aaacttttaccaagctgatcatttgttcatacctgccattatgaactcattccagacact
tgcctggggaatagctctgatcgtcgacccactttgtgcattgctatttgaccctcgaat
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCTTTCCACAAGTTTCACCGTT 28 167 267 Antisense
GAGTTTCTACAGTCTTCTTGGCTCT 171 399 321 Antisense
GTCCGACCAATTTTCTACAGCATTC 105 477 382 Antisense
AATTTGCGCTTGTCAATGTTCTTCT 301 175 431 Antisense
TATATAAATCAGCACGGACCCGTCT 706 657 500 Antisense
AATGATTCCATCGTCTTTTCTAGTC 686 163 567 Antisense
GATCATTTGTTCATACCTGCCATTA 17 421 643 Antisense
AACTCATTCCAGACACTTGCCTGGG 440 139 670 Antisense
TGGGGAATAGCTCTGATCGTCGACC 627 551 691 Antisense
TCGACCCACTTTGTGCATTGCTATT 112 603 710 Antisense
TGCATTGCTATTTGACCCTCGAATA 228 579 723 Antisense
Sequence Source Affymetrix Proprietary Database