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[187426_s_at]

Description F19B6.2A /REP_DB=WormBase Gene ID /WP=CE05667 /TR=SW:Q19584 /GB=CAA93460.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 68      6grp_total > 95      4grp_total > 40      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 516
1 2 3 4 range
A 1841.4
(-3)
P 		1892.6
(-2.1)
P 		2180.3
(3)
P 		1891.8
(-2.1)
P 		339
B 1863.5
(-3)
P 		2189
(2.7)
P 		2205.9
(3)
P 		2090.4
(1)
P 		342
C 1841.9
(-3)
P 		2033.3
(-0.8)
P 		2357.5
(3)
P 		1912
(-2.2)
P 		516
avr 1848.9
(-3) 		2038.3
(-0.2) 		2247.9
(3) 		1964.7
(-1.3) 		399

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1163
1 2 3 4 5 6 range
A 1786.1
(-2.2)
P 		1918.9
(-1.4)
P 		1655.3
(-3)
P 		2542
(2.4)
P 		2192.5
(0.3)
P 		2640.7
(3)
P 		985
B 1727.7
(-1.9)
P 		1726.1
(-1.9)
P 		1533.2
(-3)
P 		2384.1
(1.8)
P 		2605.4
(3)
P 		2088.9
(0.1)
P 		1072
C 1907.3
(-1.3)
P 		1594.9
(-3)
P 		2221
(0.4)
P 		2155.9
(0.1)
P 		2696.5
(3)
P 		2445.7
(1.6)
P 		1102
avr 1807
(-2.5) 		1746.6
(-3) 		1803.2
(-2.5) 		2360.7
(1.9) 		2498.1
(3) 		2391.8
(2.2) 		752
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 545
1 2 3 4 range
A 670.4
(3)
P 		410.8
(-1)
P 		570
(1.5)
P 		276.9
(-3)
P 		394
B 594.3
(3)
P 		540.6
(0.8)
P 		511.2
(-0.4)
P 		445.5
(-3)
P 		149
C 609.7
(0.5)
P 		584.6
(0.2)
P 		821.7
(3)
P 		322.4
(-3)
P 		499
avr 624.8
(2.8) 		512
(0.4) 		634.3
(3) 		348.3
(-3) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 729
1 2 3 4 5 6 range
A 329.3
(-3)
P 		682.4
(3)
P 		360.5
(-2.5)
P 		644.7
(2.4)
P 		661.6
(2.6)
P 		642.9
(2.3)
P 		353
B 601.2
(-1)
P 		574.5
(-1.2)
P 		372.3
(-3)
P 		631.5
(-0.7)
P 		1058.5
(3)
P 		778.9
(0.6)
P 		686
C 707
(0.7)
P 		486.6
(-2.3)
P 		565.3
(-1.2)
P 		433.5
(-3)
P 		872.5
(3)
P 		818.7
(2.3)
P 		439
avr 545.8
(-1.4) 		581.2
(-0.9) 		432.7
(-3) 		569.9
(-1.1) 		864.2
(3) 		746.8
(1.4) 		432
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187426_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9980
Sequence Type Exemplar sequence
Representative Public ID F19B6.2A NCBI
Target Description F19B6.2A /REP_DB=WormBase Gene ID /WP=CE05667 /TR=SW:Q19584 /GB=CAA93460.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069950(11), NM_069948(11), NM_069947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069950 NCBI Caenorhabditis elegans F19B6.1a (F19B6.1) mRNA, complete cds. 11/11 None
NM_069948 NCBI Caenorhabditis elegans Ubiquitin Fusion Degradation (yeast UFD homolog) family member (ufd-1) (ufd-1) mRNA, complete cds. 11/11 None
NM_069947 NCBI Caenorhabditis elegans Ubiquitin Fusion Degradation (yeast UFD homolog) family member (ufd-1) (ufd-1) mRNA, complete cds. 11/11 None
SNAP00000008408 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12329483:12330845:-1 11/11 None
GENEFINDER00000008414 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12329483:12330845:-1 11/11 None
F19B6.2b ENSEMBL cdna:known chromosome:CEL140:IV:12329379:12330740:-1 gene:F19B6.2 11/11 None
F19B6.2a ENSEMBL cdna:known chromosome:CEL140:IV:12329483:12330862:-1 gene:F19B6.2 11/11 None
F19B6.1a ENSEMBL cdna:known chromosome:CEL140:IV:12329395:12334571:-1 gene:F19B6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178181 2 1 NM_069950 174010_at (11), 175066_at (11), 187426_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12329488-12330851(-) 100.0 100.0
Public Domain and Genome References
Ensembl F19B6.2
F19B6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93462 Hypothetical protein F19B6.1b [Caenorhabditis elegans] ref|NP_502350.1| F19B6.1b [Caenorhabditis elegans] 0.0
blast CAA93459 Hypothetical protein F19B6.1a [Caenorhabditis elegans] ref|NP_502351.1| F19B6.1a [Caenorhabditis elegans] 0.0
blast CAE59842 Hypothetical protein CBG03314 [Caenorhabditis briggsae] 0.0
blast CAA93460 Hypothetical protein F19B6.2a [Caenorhabditis elegans] ref|NP_502348.1| Ubiquitin Fusion Degradation (yeast UFD homolog) family member (ufd-1) [Caenorhabditis elegans] sp|Q19584|UFD1_CAEEL Ubiquitin fusion degradation protein 1 homolog (UB fusion protein 1) 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR004854 EMBL-EBI Ubiquitin fusion degradation protein UFD1 4.3E-124
Pfam IPR004854 EMBL-EBI Ubiquitin fusion degradation protein UFD1 1.0E-126
Pfam IPR006083 EMBL-EBI Phosphoribulokinase/uridine kinase 5.4E-111
Sequence
Target Sequence 
>C. ELEGANS:187426_S_AT
atgcatgcctcaccaaaaacgatcggatcccaacatcatatgctggacaaactctcgaat
tcctcgtcgttgatttgaaaccggccaactctgtgtgcatcattgaatgtgatgttaatc
tcgatttcgatcctccagaaggctacgttgaacaaccgagacaggtgactcctgctgtca
ctgccaagccgcctgcgccagatgcatccgcatttattggagctggacaaaaagctggtg
gtagtggagggacaggacaaaatgcaacttctgtattcggaggagctgggcgtcgtctcg
atggaaagaagaagccatcatcttcagtatcactctcagatggaaccggtgttagtacga
gtaatgcagctccagtggcgaatgatttgccagctattccaccagtggttgtcaatgaag
actacaaaccaggtcgtgtttcattccttcgttatgattataaacgtgttgatgttctcg
aaaaagagctccgagagaaagaagccagcaaggcaggacaaccgtcaaatgtcttccgtg
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCATGCCTCACCAAAAACGATCG 32 43 470 Antisense
TGGACAAACTCTCGAATTCCTCGTC 663 547 513 Antisense
GGCCAACTCTGTGTGCATCATTGAA 587 543 552 Antisense
GTTAATCTCGATTTCGATCCTCCAG 647 445 583 Antisense
GAGACAGGTGACTCCTGCTGTCACT 96 393 627 Antisense
CTGCGCCAGATGCATCCGCATTTAT 13 237 662 Antisense
GCAACTTCTGTATTCGGAGGAGCTG 423 319 733 Antisense
AAGCCATCATCTTCAGTATCACTCT 85 149 781 Antisense
GAATGATTTGCCAGCTATTCCACCA 33 331 849 Antisense
CAAACCAGGTCGTGTTTCATTCCTT 371 189 894 Antisense
ACAACCGTCAAATGTCTTCCGTGGA 604 111 987 Antisense
Sequence Source Affymetrix Proprietary Database