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[187425_at]

Description R09E10.5 /REP_DB=WormBase Gene ID /WP=CE06287 /TR=SW:Q21874 /GB=CAA94300.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 5
(-3)
A 		5.9
(-1.4)
A 		5.1
(-2.8)
A 		8.4
(3)
A 		3
B 7.8
(-2.2)
A 		9.8
(-1.4)
A 		5.9
(-3)
A 		20.3
(3)
A 		14
C 4.7
(-2.9)
A 		7.1
(-2.5)
A 		4.1
(-3)
A 		42
(3)
A 		38
avr 5.8
(-2.7) 		7.6
(-2.2) 		5
(-3) 		23.6
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 52.8
(3)
A 		16
(-1.5)
A 		4.2
(-3)
A 		5.7
(-2.8)
A 		6.9
(-2.7)
A 		5.1
(-2.9)
A 		49
B 4.5
(-2)
A 		12.3
(3)
A 		3
(-3)
A 		4.6
(-2)
A 		4.8
(-1.8)
A 		4.7
(-1.9)
A 		9
C 5.5
(-2.1)
A 		13.7
(-0.3)
A 		4.6
(-2.3)
A 		28.7
(3)
A 		1.5
(-3)
A 		2.4
(-2.8)
A 		27
avr 20.9
(3) 		14
(0.6) 		3.9
(-3) 		13
(0.2) 		4.4
(-2.8) 		4.1
(-2.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.8
(3)
A 		1.3
(-2)
A 		1.3
(-2)
A 		1.2
(-3)
A 		1
B 2.5
(-0.7)
A 		2.4
(-0.9)
A 		1.4
(-3)
A 		4.3
(3)
A 		3
C 1.6
(-2.8)
A 		2
(-2.4)
A 		1.4
(-3)
A 		7.1
(3)
A 		6
avr 2
(-1.7) 		1.9
(-1.9) 		1.4
(-3) 		4.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.7
(3)
A 		5.7
(0.3)
A 		0.9
(-3)
A 		1.4
(-2.7)
A 		2.1
(-2.2)
A 		1.2
(-2.8)
A 		9
B 1.6
(-1.4)
A 		4.1
(3)
A 		0.7
(-3)
A 		1.2
(-2.1)
A 		2
(-0.7)
A 		1.7
(-1.2)
A 		3
C 2
(-1.3)
A 		4.2
(1.2)
A 		1.2
(-2.2)
A 		5.8
(3)
A 		0.5
(-3)
A 		0.8
(-2.7)
A 		5
avr 4.4
(2.5) 		4.7
(3) 		0.9
(-3) 		2.8
(-0) 		1.5
(-2.1) 		1.2
(-2.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187425_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9640
Sequence Type Exemplar sequence
Representative Public ID R09E10.5 NCBI
Target Description R09E10.5 /REP_DB=WormBase Gene ID /WP=CE06287 /TR=SW:Q21874 /GB=CAA94300.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069489(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069489 NCBI Caenorhabditis elegans R09E10.5 (R09E10.5) mRNA, complete cds. 11/11 None
SNAP00000005969 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10296058:10302264:-1 11/11 None
GENEFINDER00000005987 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10296058:10305984:-1 11/11 None
R09E10.5 ENSEMBL cdna:known chromosome:CEL140:IV:10296058:10302330:-1 gene:R09E10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10296063-10302336(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09E10.5
Entrez Gene 187743 Entrez gene
SwissProt Q21874 EMBL-EBI
WormBase CE06287 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7160 cell-matrix adhesion inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94300 Hypothetical protein R09E10.5 [Caenorhabditis elegans] ref|NP_501890.1| R09E10.5 [Caenorhabditis elegans] sp|Q21874|YF1M_CAEEL Hypothetical protein R09E10.5 precursor 0.0
blast CAE60721 Hypothetical protein CBG04396 [Caenorhabditis briggsae] 0.0
blast CAE62038 Hypothetical protein CBG06054 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.1.2.Dihydropyrimidine dehydrogenase, N-terminal domain All alpha proteins; Globin-like; alpha-helical ferredoxin; Dihydropyrimidine dehydrogenase, N-terminal domain 2.40000009536743
scop a.1.2.Dihydropyrimidine dehydrogenase, N-terminal domain All alpha proteins; Globin-like; alpha-helical ferredoxin; Dihydropyrimidine dehydrogenase, N-terminal domain 2.20000004768372
Pfam IPR010362 EMBL-EBI Nid 6.6E-29
Pfam IPR005533 EMBL-EBI AMOP domain 1.5E-112
Pfam IPR010362 EMBL-EBI Nid 6.6E-29
Pfam IPR005533 EMBL-EBI AMOP domain 1.5E-112
Pfam IPR010362 EMBL-EBI Nid 6.6E-29
Pfam IPR005533 EMBL-EBI AMOP domain 1.5E-112
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501890.1 1 1348-1370
R09E10.5 1 1348-1370
SNAP00000005969 1 1326-1348
GENEFINDER00000005987 1 1390-1412
Sequence
Target Sequence 
>C. ELEGANS:187425_AT
gagcacttgctattcgacagtacaacagctgcggagccattaacattgaatatccagagt
atatgatgaagacaccagccttatcatctggttatttacaaggagatgttgcaagatttg
agtgttatcaatctcattgggttaaaggagatcatgaatataaatgcggaatcgttgtcg
attacaaccgtccaaatgagtatcgctttgaatggaacaaaggaaatcaaccgtggtgta
gatcgagaatcaaggaaaattacttcaaatggttggctgttattgccggaatcgttggaa
tcatcattgttatactcttgatcttccttgtcttctggtgtatcaaacgaaagaagctcc
aggaaagcagaaactacagtggaacagcagcatacagtaacaacgcattccaaaatcaga
catacgagacaaaaccgtcacgtgcattatctgtgggagatttgtcaacagctccgagaa
ctgtggccatgccaccgccacgtggcacaactgcaacaccaatgacgctagaaccacgtg
gattctcgcctgttccatcagatgttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCACTTGCTATTCGACAGTACAA 483 389 3785 Antisense
GACAGTACAACAGCTGCGGAGCCAT 356 369 3800 Antisense
GACACCAGCCTTATCATCTGGTTAT 79 369 3855 Antisense
ACAACCGTCCAAATGAGTATCGCTT 458 111 3968 Antisense
GGTTGGCTGTTATTGCCGGAATCGT 555 507 4055 Antisense
ATTGTTATACTCTTGATCTTCCTTG 397 5 4090 Antisense
ATCTTCCTTGTCTTCTGGTGTATCA 477 31 4105 Antisense
AACCGTCACGTGCATTATCTGTGGG 495 147 4217 Antisense
ACAGCTCCGAGAACTGTGGCCATGC 443 109 4252 Antisense
GGCACAACTGCAACACCAATGACGC 447 535 4288 Antisense
CTCGCCTGTTCCATCAGATGTTCGA 103 233 4329 Antisense
Sequence Source Affymetrix Proprietary Database