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[187424_s_at]

Description C45G9.6 /REP_DB=WormBase Gene ID /WP=CE27857 /TR=SW:Q09279 /GB=AAA62549.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      4grp_high_8_8 > 28      6grp_total > 82      4grp_total > 36      6grp_high1_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 98.1
(1.5)
P 		108.9
(3)
P 		65.1
(-3)
A 		103.7
(2.3)
A 		44
B 96.1
(-0.9)
P 		114.4
(3)
M 		86.3
(-3)
A 		99.3
(-0.2)
P 		28
C 138.9
(2.8)
P 		130.3
(1.8)
P 		88
(-3)
P 		140.6
(3)
P 		53
avr 111
(1.9) 		117.9
(3) 		79.8
(-3) 		114.5
(2.5) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 89.5
(-2.6)
A 		127
(1.5)
P 		140.4
(3)
P 		124.5
(1.2)
P 		121
(0.8)
P 		86.3
(-3)
P 		54
B 88.7
(-3)
P 		139.4
(3)
P 		116.2
(0.3)
P 		132.5
(2.2)
P 		134.6
(2.4)
P 		96.5
(-2.1)
P 		51
C 77.1
(-3)
P 		125.7
(3)
P 		76.9
(-3)
P 		123.7
(2.8)
P 		95.3
(-0.7)
P 		96.1
(-0.6)
P 		49
avr 85.1
(-3) 		130.7
(3) 		111.2
(0.4) 		126.9
(2.5) 		117
(1.2) 		93
(-2) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 35.7
(3)
P 		23.7
(-0.5)
P 		17
(-2.5)
A 		15.2
(-3)
A 		21
B 30.7
(3)
P 		28.3
(1.7)
M 		20
(-3)
A 		21.2
(-2.3)
P 		11
C 46
(3)
P 		37.4
(0.7)
P 		30.7
(-1.1)
P 		23.7
(-3)
P 		22
avr 37.5
(3) 		29.8
(0.4) 		22.6
(-2.1) 		20
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 16.5
(-3)
A 		45.2
(3)
P 		30.6
(-0.1)
P 		31.6
(0.2)
P 		36.5
(1.2)
P 		21
(-2.1)
P 		29
B 30.8
(-2.4)
P 		46.4
(1.1)
P 		28.2
(-3)
P 		35.1
(-1.4)
P 		54.7
(3)
P 		36
(-1.2)
P 		27
C 28.6
(-0.1)
P 		38.4
(3)
P 		19.6
(-3)
P 		24.9
(-1.3)
P 		30.8
(0.6)
P 		32.2
(1)
P 		19
avr 25.3
(-3) 		43.3
(3) 		26.1
(-2.7) 		30.5
(-1.3) 		40.7
(2.1) 		29.7
(-1.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187424_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6329
Sequence Type Exemplar sequence
Representative Public ID C45G9.6 NCBI
Target Description C45G9.6 /REP_DB=WormBase Gene ID /WP=CE27857 /TR=SW:Q09279 /GB=AAA62549.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171110(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171110 NCBI Caenorhabditis elegans C45G9.6a (C45G9.6) mRNA, complete cds. 9/11 A 
SNAP00000017851 ENSEMBL cdna:SNAP chromosome:CEL140:III:5036680:5040250:1 9/11 None
GENEFINDER00000017868 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5036680:5044415:1 10/11 None
C45G9.6a ENSEMBL cdna:known chromosome:CEL140:III:5036680:5040363:1 gene:C45G9.6 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175684 2 1 NM_171110 174481_at (11), 187424_s_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5036678-5039948(+) 100.0 100.0
Public Domain and Genome References
Ensembl C45G9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741124 C45G9.6a [Caenorhabditis elegans] gb|AAM22050.1| Hypothetical protein C45G9.6a [Caenorhabditis elegans] sp|Q09279|YQI6_CAEEL Hypothetical protein C45G9.6 in chromosome III 0.0
blast A88448 protein C45G9.6 [imported] - Caenorhabditis elegans 0.0
blast CAE75112 Hypothetical protein CBG23037 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187424_S_AT
tgggagagagctgctctggccgagttcggtttgttgaccgtaatgttacagtttgtcgct
atgacatgttcaaaaaacatcgtcaatgcctctatcattcggattgtatatcaggacagc
gatgtactccaacaggcagagacattgcaacttgtgagacagatatttccgcaacgattg
gttcaattcaatgtttttacgattatgagtgttccggtggtgagaagtgtactcttgttg
atgagaaggaacgcaaatttgtttgtcgaccatcaccaacttccgatccaagaatgaatc
agatatgtactacaaactcgcagtgtccattccaacaggtttgtgcagaaaagaataatg
cagaattactgaagataacaatttccatgtatatttttgaatccaactttacacaaaatt
ctgaaagttatggatgttttgtgtctcaaaattctaaaaatttatctgtcccgacctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGAGAGAGCTGCTCTGGCCGAGT 205 555 1163 Antisense
CTGGCCGAGTTCGGTTTGTTGACCG 147 241 1178 Antisense
AATGTTACAGTTTGTCGCTATGACA 238 165 1204 Antisense
AAAACATCGTCAATGCCTCTATCAT 287 131 1236 Antisense
ATGCCTCTATCATTCGGATTGTATA 609 41 1248 Antisense
GATGTACTCCAACAGGCAGAGACAT 548 409 1283 Antisense
GTGAGACAGATATTTCCGCAACGAT 425 483 1316 Antisense
ATTTCCGCAACGATTGGTTCAATTC 311 15 1327 Antisense
GATTATGAGTGTTCCGGTGGTGAGA 696 429 1363 Antisense
TCCATTCCAACAGGTTTGTGCAGAA 598 591 1488 Antisense
TAAAAATTTATCTGTCCCGACCTAT 546 639 1617 Antisense
Sequence Source Affymetrix Proprietary Database