[Home] | [Total List]

[187423_at]

Description ZK1321.1 /REP_DB=WormBase Gene ID /WP=CE01708 /TR=SW:Q09368 /GB=CAA88475.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 19
(-1.2)
A 		42.7
(1.5)
A 		2.2
(-3)
A 		56.7
(3)
A 		55
B 39.5
(1.4)
P 		31.2
(0.4)
A 		1.9
(-3)
A 		53.4
(3)
A 		52
C 12.6
(-2.4)
A 		16.5
(-2)
A 		7.4
(-3)
A 		60.8
(3)
A 		53
avr 23.7
(-0.8) 		30.1
(-0) 		3.8
(-3) 		57
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 2.5
(-2.9)
A 		1.6
(-3)
A 		28.2
(-0.1)
A 		1.8
(-3)
A 		56.4
(3)
A 		2.8
(-2.9)
A 		55
B 1.5
(-3)
A 		3.2
(-2.6)
A 		14.4
(0)
A 		4.5
(-2.3)
A 		27.3
(3)
A 		8.8
(-1.3)
A 		26
C 50.1
(3)
A 		20.9
(-0.6)
A 		9.6
(-2)
A 		30.7
(0.6)
A 		33.7
(1)
A 		1.5
(-3)
A 		49
avr 18
(-0.6) 		8.6
(-2.3) 		17.4
(-0.8) 		12.3
(-1.6) 		39.1
(3) 		4.4
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.9
(1.3)
A 		9.3
(3)
A 		0.6
(-3)
A 		8.3
(2.3)
A 		9
B 12.6
(3)
P 		7.7
(0.6)
A 		0.4
(-3)
A 		11.4
(2.4)
A 		12
C 4.2
(-1.7)
A 		4.7
(-1.3)
A 		2.6
(-3)
A 		10.2
(3)
A 		8
avr 7.9
(1.6) 		7.2
(1.1) 		1.2
(-3) 		10
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.6
(-2.9)
A 		6.1
(-0.9)
A 		0.4
(-3)
A 		17
(3)
A 		0.7
(-2.9)
A 		17
B 0.5
(-3)
A 		1.1
(-2.7)
A 		3.5
(-1.3)
A 		1.2
(-2.6)
A 		11.1
(3)
A 		3.3
(-1.4)
A 		11
C 18.6
(3)
A 		6.4
(-1)
A 		2.4
(-2.4)
A 		6.2
(-1.1)
A 		10.9
(0.4)
A 		0.5
(-3)
A 		18
avr 6.5
(-0.4) 		2.7
(-2.4) 		4
(-1.7) 		2.6
(-2.4) 		13
(3) 		1.5
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187423_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4024
Sequence Type Exemplar sequence
Representative Public ID ZK1321.1 NCBI
Target Description ZK1321.1 /REP_DB=WormBase Gene ID /WP=CE01708 /TR=SW:Q09368 /GB=CAA88475.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063702(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063702 NCBI Caenorhabditis elegans ZK1321.1 (ZK1321.1) mRNA, complete cds. 11/11 None
GENEFINDER00000027169 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9753941:9755087:1 11/11 None
ZK1321.1 ENSEMBL cdna:known chromosome:CEL140:II:9753941:9755087:1 gene:ZK1321.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9753937-9755084(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1321.1
Entrez Gene 191567 Entrez gene
SwissProt Q09368 EMBL-EBI
WormBase CE01708 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88475 Hypothetical protein ZK1321.1 [Caenorhabditis elegans] ref|NP_496103.1| ZK1321.1 [Caenorhabditis elegans] sp|Q09368|YS31_CAEEL Hypothetical protein ZK1321.1 in chromosome II 2.0E-81
blast CAE57986 Hypothetical protein CBG01049 [Caenorhabditis briggsae] 1.0E-30
Sequence
Target Sequence 
>C. ELEGANS:187423_AT
gcagttctcactttcatacctgatctctattttctacataatattgataacttctgaaac
tacagcgttctcacctaaaaggcctaacctatacatttggctagcacagaatagttatat
ttgtgatccgactctgctcaacaagcgaactcatcgatttctgacaccttgggaatctgt
cagattacggtgttcatgtggtgatccattggcgaccaaatcagcgtgtggcaggaaaca
tggaaattcaaaccagaagcttgcttgttttcgattacctgatccatgtctacgcgagta
tgcagtgattttcgagcatggcgtgcctctgccaccctcaaaacctcatcgaattgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTTCTCACTTTCATACCTGATC 439 311 15 Antisense
ATACCTGATCTCTATTTTCTACATA 248 23 30 Antisense
TACAGCGTTCTCACCTAAAAGGCCT 157 631 75 Antisense
GGCCTAACCTATACATTTGGCTAGC 49 543 95 Antisense
TCATCGATTTCTGACACCTTGGGAA 640 621 165 Antisense
ATCTGTCAGATTACGGTGTTCATGT 90 35 189 Antisense
GGCGACCAAATCAGCGTGTGGCAGG 548 539 225 Antisense
AAGCTTGCTTGTTTTCGATTACCTG 255 149 271 Antisense
TCGATTACCTGATCCATGTCTACGC 394 601 285 Antisense
TGATTTTCGAGCATGGCGTGCCTCT 686 563 320 Antisense
CACCCTCAAAACCTCATCGAATTGT 282 201 347 Antisense
Sequence Source Affymetrix Proprietary Database