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[187422_at]

Description R13F6.2 /REP_DB=WormBase Gene ID /WP=CE25085 /TR=SW:Q21985 /GB=AAC47042.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 52.1
(3)
A 		52
(3)
A 		28.1
(-3)
A 		44.1
(1)
A 		24
B 8.5
(-3)
A 		20.5
(-1.1)
A 		47.1
(3)
A 		45
(2.7)
A 		39
C 16.2
(-2.9)
A 		72.9
(3)
A 		14.8
(-3)
A 		64.5
(2.1)
A 		58
avr 25.6
(-3) 		48.5
(2.4) 		30
(-2) 		51.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 12
(-2)
A 		9
(-2.3)
A 		51.6
(3)
A 		3.8
(-3)
A 		37.2
(1.2)
A 		16.9
(-1.4)
A 		48
B 3.8
(-3)
A 		22.7
(1.9)
A 		15.6
(0.1)
A 		17.6
(0.6)
A 		26.8
(3)
A 		22.5
(1.9)
A 		23
C 16.7
(-3)
A 		26.1
(-1.7)
A 		61.2
(3)
A 		39.4
(0.1)
A 		41.6
(0.4)
A 		29.9
(-1.2)
A 		45
avr 10.8
(-3) 		19.3
(-1.4) 		42.8
(3) 		20.3
(-1.2) 		35.2
(1.6) 		23.1
(-0.7) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19
(3)
A 		11.3
(-0.7)
A 		7.3
(-2.6)
A 		6.5
(-3)
A 		13
B 2.7
(-3)
A 		5.1
(-1.2)
A 		10.9
(3)
A 		9.6
(2)
A 		8
C 5.4
(-2.9)
A 		21
(3)
A 		5.2
(-3)
A 		10.9
(-0.8)
A 		16
avr 9
(-1.5) 		12.5
(3) 		7.8
(-3) 		9
(-1.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.2
(-2.3)
A 		3.2
(-1.7)
A 		11.2
(3)
A 		1
(-3)
A 		11.2
(3)
A 		4.1
(-1.2)
A 		10
B 1.3
(-3)
A 		7.6
(0.9)
A 		3.8
(-1.4)
A 		4.7
(-0.9)
A 		10.9
(3)
A 		8.4
(1.4)
A 		10
C 6.2
(-3)
A 		8
(-1.9)
A 		15.6
(3)
A 		7.9
(-1.9)
A 		13.5
(1.7)
A 		10
(-0.6)
A 		9
avr 3.2
(-3) 		6.3
(-0.9) 		10.2
(1.8) 		4.5
(-2.1) 		11.9
(3) 		7.5
(-0) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187422_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7478
Sequence Type Exemplar sequence
Representative Public ID R13F6.2 NCBI
Target Description R13F6.2 /REP_DB=WormBase Gene ID /WP=CE25085 /TR=SW:Q21985 /GB=AAC47042.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066091 NCBI Caenorhabditis elegans R13F6.2 (R13F6.2) mRNA, complete cds. 11/11 None
R13F6.2 ENSEMBL cdna:known chromosome:CEL140:III:6859796:6860719:1 gene:R13F6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003261 7/11 Cross Hyb Matching Probes None
GENEFINDER00000003272 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6859794-6860718(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13F6.2
Entrez Gene 187869 Entrez gene
SwissProt Q21985 EMBL-EBI
WormBase CE25085 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498492 R13F6.2 [Caenorhabditis elegans] gb|AAC47042.2| Hypothetical protein R13F6.2 [Caenorhabditis elegans] sp|Q21985|YNQ2_CAEEL Hypothetical protein R13F6.2 in chromosome III 1.0E-118
blast NP_498491 R13F6.8 [Caenorhabditis elegans] gb|AAC47048.1| Hypothetical protein R13F6.8 [Caenorhabditis elegans] sp|Q21984|YNQ8_CAEEL Hypothetical protein R13F6.8 in chromosome III precursor 5.0E-98
blast T16749 hypothetical protein R13F6.2 - Caenorhabditis elegans 2.0E-93
Sequence
Target Sequence 
>C. ELEGANS:187422_AT
aactaatcctttcagctctttttgtagctctcgtagcagctgactgcaacatgagatgtc
cagatggatatatgtcattcaaaagaactccaacccccaagaactcgatgactgggatgg
caattttgtctgatactctcatctctccaaatcaagccaaaaaagtttgtgagaaagatg
gatcaatcctgacatcatttgaaaattttgatgagcgtaccaaactttccactgttcttc
gtgatttccttactgcaaagaaattggatcgtggatcaatgattgtcgatggacatcgtt
tgaagaactgcgagactacagataaaaccgttttggctactgtagaatgcaggaattcat
catctggtttcactactgatgagaagcatactgataatactttcatgtggaaaagctggt
ctgcaactgaaccaggacagaccatctttgaaaaaagcattgaatcttgccttcaactct
caatttctcaattccctgctcgcagtgagctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTAATCCTTTCAGCTCTTTTTGT 42 139 20 Antisense
TGTAGCTCTCGTAGCAGCTGACTGC 169 561 42 Antisense
TCATTCAAAAGAACTCCAACCCCCA 437 619 94 Antisense
GAACTCGATGACTGGGATGGCAATT 341 349 120 Antisense
AATTTTGTCTGATACTCTCATCTCT 628 175 141 Antisense
TCTCATCTCTCCAAATCAAGCCAAA 449 613 156 Antisense
CTTCGTGATTTCCTTACTGCAAAGA 350 219 256 Antisense
AATTCATCATCTGGTTTCACTACTG 228 177 373 Antisense
GAACCAGGACAGACCATCTTTGAAA 699 345 448 Antisense
TTGCCTTCAACTCTCAATTTCTCAA 123 703 486 Antisense
TCAATTCCCTGCTCGCAGTGAGCTG 526 633 507 Antisense
Sequence Source Affymetrix Proprietary Database