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[187420_at]

Description R10E11.7 /REP_DB=WormBase Gene ID /WP=CE00309 /TR=SW:P34551 /GB=CAA82352.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 0      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 31.6
(0)
A 		7
(-3)
A 		55.5
(3)
A 		30.3
(-0.1)
A 		49
B 42.7
(-2.6)
A 		53.2
(3)
A 		47.1
(-0.3)
A 		42
(-3)
A 		11
C 29.1
(-1.6)
A 		12.2
(-3)
A 		29.1
(-1.6)
A 		83.1
(3)
A 		71
avr 34.5
(-0.7) 		24.1
(-3) 		43.9
(1.3) 		51.8
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 16.4
(-1.6)
A 		15.2
(-1.8)
A 		39.8
(3)
A 		24.4
(0)
A 		39.4
(2.9)
A 		9
(-3)
A 		31
B 13.6
(-2)
A 		51
(3)
A 		6.5
(-3)
A 		6.4
(-3)
A 		25.9
(-0.4)
A 		17.2
(-1.5)
A 		45
C 36.2
(0)
A 		23.2
(-1.5)
A 		56.7
(2.4)
A 		61.4
(3)
A 		16
(-2.4)
A 		10.9
(-3)
A 		51
avr 22.1
(-0.3) 		29.8
(1.8) 		34.3
(3) 		30.7
(2) 		27.1
(1) 		12.4
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.5
(1.6)
A 		1.5
(-3)
A 		14.5
(3)
A 		4.4
(-1.7)
A 		13
B 13.6
(3)
A 		13.1
(2.4)
A 		10.9
(-0.4)
A 		8.9
(-3)
A 		5
C 9.6
(0.5)
A 		3.5
(-3)
A 		10.1
(0.8)
A 		14
(3)
A 		11
avr 11.6
(2.8) 		6
(-3) 		11.8
(3) 		9.1
(0.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3
(-2.5)
A 		5.4
(-1)
A 		8.7
(1)
A 		6.2
(-0.5)
A 		11.9
(3)
A 		2.2
(-3)
A 		10
B 4.7
(-1.8)
A 		17
(3)
A 		1.6
(-3)
A 		1.7
(-3)
A 		10.5
(0.5)
A 		6.4
(-1.1)
A 		15
C 13.4
(2.4)
A 		7.1
(-1.1)
A 		14.4
(3)
A 		12.3
(1.8)
A 		5.2
(-2.1)
A 		3.6
(-3)
A 		11
avr 7
(0.1) 		9.8
(3) 		8.2
(1.3) 		6.7
(-0.3) 		9.2
(2.4) 		4.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7506
Sequence Type Exemplar sequence
Representative Public ID R10E11.7 NCBI
Target Description R10E11.7 /REP_DB=WormBase Gene ID /WP=CE00309 /TR=SW:P34551 /GB=CAA82352.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066770(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066770 NCBI Caenorhabditis elegans Serpentine Receptor, class XA family member (srxa-10) (srxa-10) mRNA, complete cds. 11/11 None
SNAP00000016244 ENSEMBL cdna:SNAP chromosome:CEL140:III:9792481:9796442:-1 11/11 None
R10E11.7 ENSEMBL cdna:known chromosome:CEL140:III:9795443:9796442:-1 gene:R10E11.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016246 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9795438-9796438(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srxa-10
Ensembl R10E11.7
Entrez Gene 187780 Entrez gene
SwissProt P34551 EMBL-EBI
WormBase CE38210 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82352 Hypothetical protein R10E11.7 [Caenorhabditis elegans] ref|NP_499171.2| Serpentine Receptor, class XA family member (srxa-10) [Caenorhabditis elegans] 1.0E-171
blast CAE65130 Hypothetical protein CBG09995 [Caenorhabditis briggsae] 1.0E-141
blast P34551 Hypothetical protein R10E11.7 in chromosome III 1.0E-121
blast P34551 Hypothetical protein R10E11.7 in chromosome III 1.0E-120
blast CAA82352 Hypothetical protein R10E11.7 [Caenorhabditis elegans] ref|NP_499171.2| Serpentine Receptor, class XA family member (srxa-10) [Caenorhabditis elegans] 1.0E-114
blast CAE65130 Hypothetical protein CBG09995 [Caenorhabditis briggsae] 8.0E-99
blast CAA82352 Hypothetical protein R10E11.7 [Caenorhabditis elegans] ref|NP_499171.2| Serpentine Receptor, class XA family member (srxa-10) [Caenorhabditis elegans] 4.0E-76
blast P34551 Hypothetical protein R10E11.7 in chromosome III 6.0E-76
blast CAE65130 Hypothetical protein CBG09995 [Caenorhabditis briggsae] 2.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 1.1E-87
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 1.1E-75
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499171.2 7 10-32,45-67,82-104,125-147,178-200,225-247,262-284
R10E11.7 5 24-46,61-83,104-126,131-153,193-215
SNAP00000016244 8 24-46,61-83,104-126,131-153,196-218,233-255,284-306,321-343
Sequence
Target Sequence 
>C. ELEGANS:187420_AT
ttacgagacatatgctctaccagccacatacatctataacatggcaatttctaacgcact
tctagtcatattcggaataatggtctacatactcccctattacatgtccgataaaacata
taaaacatatcgggattcaataggagctatgatttcggtgggtgtaacgttcaattatct
tcatccaatgctcacacttattctgatgactattaatcgaatagcagtagttgtgagtat
gcaggcatctcagcttttcacttctagcaaaatatggctctatacttcatttcatatgac
tgccaatttcgcatgtcttattattccctatctgaatcacaacgttctccaattattact
ctgtattctttccgttcgtagcattctttttcaatgtgctagttattataaacttcaaac
ttcaaagatcaccaacatatacaaagatcaaaaatatgttccgacgtgggaatggagatc
agtttacatcaatgcttcggatgttttaaaagcgaaaaagaagactgaacgaatgcttat
gattcaagcttttatcactgctttctatctttctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACGAGACATATGCTCTACCAGCC 455 683 57 Antisense
CTCTACCAGCCACATACATCTATAA 104 231 71 Antisense
ACATGGCAATTTCTAACGCACTTCT 205 107 95 Antisense
AATAATGGTCTACATACTCCCCTAT 551 171 132 Antisense
TATCTTCATCCAATGCTCACACTTA 697 659 232 Antisense
TATGCAGGCATCTCAGCTTTTCACT 692 655 294 Antisense
ATGACTGCCAATTTCGCATGTCTTA 464 45 352 Antisense
GCATGTCTTATTATTCCCTATCTGA 541 309 367 Antisense
ATCTGAATCACAACGTTCTCCAATT 294 33 386 Antisense
GTATTCTTTCCGTTCGTAGCATTCT 134 451 419 Antisense
TTATCACTGCTTTCTATCTTTCTGT 73 681 608 Antisense
Sequence Source Affymetrix Proprietary Database