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[187418_s_at]

Description Y110A2AR.2 /REP_DB=WormBase Gene ID /WP=CE26044 /TR=Q9N490 /GB=AAF60411.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 13      6grp_cgc > 57      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 201.2
(3)
M 		132.9
(0.1)
A 		59.5
(-3)
A 		139.2
(0.4)
A 		142
B 166.8
(1.4)
P 		40.6
(-3)
A 		102.1
(-0.8)
A 		211.9
(3)
P 		171
C 93.6
(-3)
A 		134.6
(-1.7)
A 		110.8
(-2.5)
M 		284.5
(3)
A 		191
avr 153.9
(0.1) 		102.7
(-2.4) 		90.8
(-3) 		211.9
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 125.1
(1.3)
A 		75.8
(-2.3)
A 		111.3
(0.3)
A 		89
(-1.4)
A 		66.7
(-3)
A 		148.9
(3)
A 		82
B 84.2
(-3)
A 		84
(-3)
A 		131.4
(2.4)
P 		128.3
(2.1)
A 		103.1
(-0.8)
A 		136.5
(3)
M 		53
C 57.1
(-3)
A 		111.2
(1.3)
A 		74.3
(-1.6)
A 		79.8
(-1.2)
A 		133.1
(3)
A 		121.3
(2.1)
A 		76
avr 88.8
(-3) 		90.3
(-2.8) 		105.7
(-0.8) 		99
(-1.7) 		101
(-1.4) 		135.6
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 73.2
(3)
M 		28.8
(-1.6)
A 		15.6
(-3)
A 		20.4
(-2.5)
A 		58
B 53.2
(3)
P 		10
(-3)
A 		23.6
(-1.1)
A 		45.1
(1.9)
P 		43
C 31
(-3)
A 		38.7
(-0.3)
A 		38.6
(-0.3)
M 		48
(3)
A 		17
avr 52.5
(3) 		25.8
(-3) 		25.9
(-3) 		37.8
(-0.3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 23.1
(-1.9)
A 		27
(-0.4)
A 		24.2
(-1.5)
A 		22.6
(-2.1)
A 		20.1
(-3)
A 		36.2
(3)
A 		16
B 29.3
(-2.7)
A 		28
(-3)
A 		31.9
(-2)
P 		34
(-1.4)
A 		41.9
(0.6)
A 		50.9
(3)
M 		23
C 21.2
(-1.9)
A 		33.9
(1)
A 		18.9
(-2.4)
A 		16.1
(-3)
A 		43.1
(3)
A 		40.6
(2.4)
A 		27
avr 24.5
(-2.9) 		29.6
(-1.2) 		25
(-2.7) 		24.2
(-3) 		35
(0.5) 		42.6
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187418_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5720
Sequence Type Exemplar sequence
Representative Public ID Y110A2AR.2 NCBI
Target Description Y110A2AR.2 /REP_DB=WormBase Gene ID /WP=CE26044 /TR=Q9N490 /GB=AAF60411.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061996(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061996 NCBI Caenorhabditis elegans UBiquitin Conjugating enzyme family member (ubc-15) (ubc-15) mRNA, complete cds. 11/11 None
SNAP00000019161 ENSEMBL cdna:SNAP chromosome:CEL140:II:2908639:2918968:-1 10/11 None
GENEFINDER00000019163 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2908091:2919148:-1 10/11 None
Y110A2AR.2 ENSEMBL cdna:known chromosome:CEL140:II:2906539:2913572:-1 gene:Y110A2AR.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2906537-2910693(-) 75.49 98.33
Public Domain and Genome References
Gene Title
Gene Symbol ubc-15
Ensembl Y110A2AR.2
Entrez Gene 173637 Entrez gene
SwissProt Q9N490 EMBL-EBI
WormBase CE26044 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6464 protein modification inferred from electronic annotation QuickGO AmiGO
6512 ubiquitin cycle inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4840 ubiquitin conjugating enzyme activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60411 Ubiquitin conjugating enzyme protein 15 [Caenorhabditis elegans] ref|NP_494397.1| UBiquitin Conjugating enzyme family member (ubc-15) [Caenorhabditis elegans] 1.0E-132
blast AAF60412 Hypothetical protein Y110A2AR.3a [Caenorhabditis elegans] ref|NP_494398.1| Y110A2AR.3a [Caenorhabditis elegans] 1.0E-102
blast CAE72449 Hypothetical protein CBG19619 [Caenorhabditis briggsae] 3.0E-93
blast AAF60411 Ubiquitin conjugating enzyme protein 15 [Caenorhabditis elegans] ref|NP_494397.1| UBiquitin Conjugating enzyme family member (ubc-15) [Caenorhabditis elegans] 8.0E-85
blast AAF60411 Ubiquitin conjugating enzyme protein 15 [Caenorhabditis elegans] ref|NP_494397.1| UBiquitin Conjugating enzyme family member (ubc-15) [Caenorhabditis elegans] 8.0E-83
blast CAE72448 Hypothetical protein CBG19618 [Caenorhabditis briggsae] 2.0E-81
blast CAE72448 Hypothetical protein CBG19618 [Caenorhabditis briggsae] 3.0E-77
blast AAF60412 Hypothetical protein Y110A2AR.3a [Caenorhabditis elegans] ref|NP_494398.1| Y110A2AR.3a [Caenorhabditis elegans] 3.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 4.8E-27
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 5.2E-26
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 5.2E-26
Sequence
Target Sequence 
>C. ELEGANS:187418_S_AT
gcagctggcacagcatccagctcagccgttcgacgcctccaaaaagactacgcaaaactg
atgcaagatcctgttgatggaattaaagcacttccaaatgaggataatattcttgaatgg
cattattgccttcgtggatcaccggatacaccattctatggtggttattattggggaaaa
gtgatttttaaggagaatttcccgtggagtccacctgctatcacgatgattacaccgaat
ggaagattccaaacaaatacccgcctatgcctatcaatttctgattatcatccggaatca
tggaatcccggatggactgtatctgcaattctaataggacttcattcatttatgaacgaa
aattcgccggctgccggatcaattgccggaactccacaggatcagaggatgtatgcggcg
gcgagcaaagagtttaatgttaaggtatacaactggaatttggctggaaatccgcactgc
aact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCTGGCACAGCATCCAGCTCAG 585 313 46 Antisense
TCGACGCCTCCAAAAAGACTACGCA 583 601 75 Antisense
TGCCTTCGTGGATCACCGGATACAC 618 585 172 Antisense
GTCCACCTGCTATCACGATGATTAC 392 477 254 Antisense
GAAGATTCCAAACAAATACCCGCCT 364 337 287 Antisense
CCGCCTATGCCTATCAATTTCTGAT 229 263 306 Antisense
GAATCCCGGATGGACTGTATCTGCA 638 329 348 Antisense
GCCGGCTGCCGGATCAATTGCCGGA 433 283 411 Antisense
AATTGCCGGAACTCCACAGGATCAG 245 177 426 Antisense
GATCAGAGGATGTATGCGGCGGCGA 421 419 445 Antisense
TTGGCTGGAAATCCGCACTGCAACT 479 707 505 Antisense
Sequence Source Affymetrix Proprietary Database