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[187416_at]

Description T26G10.4 /REP_DB=WormBase Gene ID /WP=CE00340 /TR=SW:P34583 /GB=CAA82361.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 48.4
(-2.8)
A 		46.6
(-3)
A 		85.2
(0.8)
A 		107.3
(3)
A 		61
B 36.8
(-3)
A 		111.2
(3)
A 		87.8
(1.1)
A 		42.9
(-2.5)
A 		74
C 39.1
(-3)
A 		84.3
(3)
A 		44.4
(-2.3)
A 		62.1
(0.1)
A 		45
avr 41.4
(-3) 		80.7
(3) 		72.5
(1.7) 		70.8
(1.5) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 56.9
(1.3)
A 		38
(-2.6)
A 		35.9
(-3)
A 		65.4
(3)
A 		40.4
(-2.1)
A 		49.4
(-0.3)
A 		30
B 39.4
(0.4)
A 		32.8
(-0.4)
A 		59.7
(3)
A 		13.9
(-2.8)
A 		12.7
(-3)
A 		53.9
(2.3)
A 		47
C 50.3
(1.4)
A 		62.1
(3)
A 		38.8
(-0.1)
A 		17
(-3)
A 		27.7
(-1.6)
A 		45.2
(0.8)
A 		45
avr 48.9
(2.8) 		44.3
(1.6) 		44.8
(1.8) 		32.1
(-1.6) 		26.9
(-3) 		49.5
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 17.6
(0.7)
A 		10.1
(-3)
A 		22.3
(3)
A 		15.7
(-0.2)
A 		12
B 11.7
(-2.2)
A 		27.5
(3)
A 		20.3
(0.7)
A 		9.1
(-3)
A 		18
C 12.9
(-1.9)
A 		24.2
(3)
A 		15.5
(-0.8)
A 		10.5
(-3)
A 		14
avr 14.1
(-1.4) 		20.6
(3) 		19.4
(2.2) 		11.8
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.5
(-1.2)
A 		13.5
(0.9)
A 		7.8
(-3)
A 		16.6
(3)
A 		12.2
(-0)
A 		12
(-0.1)
A 		9
B 13.7
(0.7)
A 		10.9
(-0.4)
A 		14.5
(1)
A 		3.7
(-3)
A 		5.2
(-2.5)
A 		20.1
(3)
A 		16
C 18.6
(2.9)
A 		18.9
(3)
A 		9.9
(-0.5)
A 		3.4
(-3)
A 		9
(-0.8)
A 		15.1
(1.5)
A 		16
avr 14.3
(1.9) 		14.4
(2) 		10.7
(-0.8) 		7.9
(-3) 		8.8
(-2.3) 		15.7
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187416_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6566
Sequence Type Exemplar sequence
Representative Public ID T26G10.4 NCBI
Target Description T26G10.4 /REP_DB=WormBase Gene ID /WP=CE00340 /TR=SW:P34583 /GB=CAA82361.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066670 NCBI Caenorhabditis elegans T26G10.4 (T26G10.4) mRNA, complete cds. 11/11 None
SNAP00000004819 ENSEMBL cdna:SNAP chromosome:CEL140:III:9420427:9421470:1 11/11 None
GENEFINDER00000004825 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9420427:9421470:1 11/11 None
T26G10.4 ENSEMBL cdna:known chromosome:CEL140:III:9420427:9421470:1 gene:T26G10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024696 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9420422-9421466(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26G10.4
Entrez Gene 188944 Entrez gene
SwissProt P34583 EMBL-EBI
WormBase CE00340 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82361 Hypothetical protein T26G10.4 [Caenorhabditis elegans] ref|NP_499071.1| T26G10.4 [Caenorhabditis elegans] sp|P34583|YN24_CAEEL Hypothetical protein T26G10.4 in chromosome III 0.0
blast T25352 hypothetical protein T27C5.9 - Caenorhabditis elegans 1.0E-114
blast CAA20973 Hypothetical protein Y102A5D.1 [Caenorhabditis elegans] ref|NP_507338.1| Y102A5D.1 [Caenorhabditis elegans] 5.0E-72
Sequence
Target Sequence 
>C. ELEGANS:187416_AT
gtggttctcctctggaatacgtacagctgccaataaaggacggagggctgggtgttccat
gcccaagagtcaccaacatggtaacgtttgttgtctcgacgatgaagaagttgtggtcgc
ccgacaactacatcagaaacctgtacatgtcgttcgcggaggaagtagtaaaaatggaga
caggcaagaaggaggtcaatttggaagatatcgctcaatacctgaacgttgagcaaagga
cagtcagatctaactttggttacaactgcttctcgaggttgaaagacgcgctgaggaacc
tagcatcaggcggtgactcaccactcttcaaaatcaaaatagtggtgaaaaacaagaagc
tggcagtgctggtccaagcaacggaggacagtaacgagaagctgttcaccgaagacggtg
tgaagaagatgcaaagggctatgaatgaacaggtcagcagagcgctcaaacaccgattcc
acaccactaagttggtaaaaagtgaaatctcaagagtcgtacagatgcaccccgcaagta
acaagttcgtcgccagaggaggaaacctgagccttgcctgccatcgatttgtgcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTTCTCCTCTGGAATACGTACA 650 489 428 Antisense
GGTGTTCCATGCCCAAGAGTCACCA 535 497 478 Antisense
TTGTGGTCGCCCGACAACTACATCA 488 707 538 Antisense
AACCTGTACATGTCGTTCGCGGAGG 496 147 565 Antisense
TTTGGTTACAACTGCTTCTCGAGGT 381 665 682 Antisense
GGAACCTAGCATCAGGCGGTGACTC 239 531 722 Antisense
GACTCACCACTCTTCAAAATCAAAA 331 373 742 Antisense
AAGAAGCTGGCAGTGCTGGTCCAAG 18 151 781 Antisense
TCAAGAGTCGTACAGATGCACCCCG 289 623 937 Antisense
GCACCCCGCAAGTAACAAGTTCGTC 530 315 954 Antisense
TTGCCTGCCATCGATTTGTGCACAA 255 699 1001 Antisense
Sequence Source Affymetrix Proprietary Database