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[187415_at]

Description B0303.8 /REP_DB=WormBase Gene ID /WP=CE00562 /TR=SW:P34259 /GB=AAA27893.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 27      6grp_cgc > 15      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 35
(-1.1)
A 		53.9
(0.7)
P 		13.5
(-3)
A 		79.8
(3)
A 		66
B 7.8
(-2.6)
A 		38.9
(3)
A 		5.6
(-3)
A 		29.1
(1.2)
A 		33
C 8.5
(-3)
A 		55.1
(3)
P 		35.8
(0.5)
P 		49.3
(2.3)
P 		47
avr 17.1
(-3) 		49.3
(2.4) 		18.3
(-2.8) 		52.7
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 86.4
(3)
P 		28.9
(-2.8)
A 		26.9
(-3)
A 		37.8
(-1.9)
P 		29.4
(-2.7)
P 		30.1
(-2.7)
A 		60
B 87.6
(3)
P 		41.5
(-0.4)
P 		21.7
(-1.8)
A 		5.9
(-3)
A 		24
(-1.7)
P 		68.1
(1.6)
P 		82
C 69.5
(2.2)
P 		77.4
(3)
P 		25
(-2.3)
A 		54.2
(0.7)
P 		17.9
(-3)
A 		41.9
(-0.6)
P 		60
avr 81.2
(3) 		49.3
(-0.3) 		24.5
(-2.9) 		32.6
(-2.1) 		23.8
(-3) 		46.7
(-0.6) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.7
(3)
A 		11.7
(2.3)
P 		3.5
(-3)
A 		11.7
(2.3)
A 		9
B 2.5
(-2.1)
A 		9.6
(3)
A 		1.3
(-3)
A 		6.2
(0.5)
A 		8
C 2.8
(-3)
A 		15.8
(3)
P 		12.5
(1.5)
P 		8.3
(-0.5)
P 		13
avr 6
(-2.8) 		12.4
(3) 		5.8
(-3) 		8.7
(-0.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 15.9
(3)
P 		10.3
(-0.3)
A 		5.8
(-3)
A 		9.6
(-0.7)
P 		8.9
(-1.2)
P 		7.3
(-2.1)
A 		10
B 30.5
(3)
P 		13.8
(-0.5)
P 		5.3
(-2.2)
A 		1.6
(-3)
A 		9.7
(-1.3)
P 		25.4
(1.9)
P 		29
C 25.8
(3)
P 		23.6
(2.3)
P 		6.4
(-2.8)
A 		10.9
(-1.5)
P 		5.8
(-3)
A 		14
(-0.5)
P 		20
avr 24.1
(3) 		15.9
(0.3) 		5.8
(-3) 		7.4
(-2.5) 		8.1
(-2.2) 		15.6
(0.2) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187415_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6152
Sequence Type Exemplar sequence
Representative Public ID B0303.8 NCBI
Target Description B0303.8 /REP_DB=WormBase Gene ID /WP=CE00562 /TR=SW:P34259 /GB=AAA27893.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066518(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066518 NCBI Caenorhabditis elegans B0303.8 (B0303.8) mRNA, complete cds. 11/11 None
SNAP00000042407 ENSEMBL cdna:SNAP chromosome:CEL140:III:8699470:8700237:-1 11/11 None
GENEFINDER00000042420 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8699470:8700237:-1 11/11 None
B0303.8 ENSEMBL cdna:known chromosome:CEL140:III:8699470:8700237:-1 gene:B0303.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8699464-8700232(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-1
Ensembl B0303.8
Entrez Gene 181916 Entrez gene
SwissProt P34259 EMBL-EBI
WormBase CE00001 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27893 Hypothetical protein B0303.8 [Caenorhabditis elegans] ref|NP_498919.2| B0303.8 [Caenorhabditis elegans] sp|P34259|YKA8_CAEEL Hypothetical protein B0303.8 in chromosome III 1.0E-114
blast CAE62729 Hypothetical protein CBG06889 [Caenorhabditis briggsae] 1.0E-39
blast CAE62728 Hypothetical protein CBG06888 [Caenorhabditis briggsae] 4.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498919.2 1 164-186
B0303.8 1 164-186
SNAP00000042407 1 164-186
GENEFINDER00000042420 1 164-186
Sequence
Target Sequence 
>C. ELEGANS:187415_AT
gagactgtctccttcatttggaacattcttcaacatattctgaaacagtgcgccttctag
catacgaatcccgaccattggaaatctatactcaaggttctattaatgagattccagttc
atttccaactacttcatcatttctctggtaaagcattatcagaggctaaatttcaaattt
tccaattgaaaaataatggactttgggattcaaaagttatcgatactgataaggttattc
tttcggttcgttcaactttttattgtgaaaatggatatttcggtccaatttgtgatcgtc
gttcacggacttttgctccaaaatctgatattcaaacttcaacacctggataccaaactc
aagttttgaaatttgatttcaaaataagtgacgacataatcatctactcctctcttgcat
ttttcgtgctcctgctcattatcttcaactgtattctgtgctgctatcgcccgaagaagt
ctcaaaaatatctagatgtatcactcggttctccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACTGTCTCCTTCATTTGGAACA 512 393 107 Antisense
TGAAACAGTGCGCCTTCTAGCATAC 356 573 147 Antisense
TAGCATACGAATCCCGACCATTGGA 492 647 164 Antisense
ATTTCCAACTACTTCATCATTTCTC 310 17 227 Antisense
TTTCGGTCCAATTTGTGATCGTCGT 388 669 384 Antisense
TGATCGTCGTTCACGGACTTTTGCT 106 565 399 Antisense
TTCAAACTTCAACACCTGGATACCA 414 669 437 Antisense
TCCTGCTCATTATCTTCAACTGTAT 489 593 536 Antisense
TTCAACTGTATTCTGTGCTGCTATC 381 685 550 Antisense
GCTGCTATCGCCCGAAGAAGTCTCA 537 297 566 Antisense
TAGATGTATCACTCGGTTCTCCAAA 459 653 599 Antisense
Sequence Source Affymetrix Proprietary Database