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[187414_at]

Description F40H6.2 /REP_DB=WormBase Gene ID /WP=CE01279 /TR=SW:Q20256 /GB=AAA62519.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 13.9
(-0.7)
A 		30.8
(3)
A 		7.8
(-2.1)
A 		3.6
(-3)
A 		27
B 7.7
(3)
A 		6.7
(1.2)
A 		4.3
(-3)
A 		5.5
(-0.9)
A 		3
C 23.7
(1.5)
A 		28.1
(2.5)
A 		30.6
(3)
A 		2.8
(-3)
A 		28
avr 15.1
(0.7) 		21.9
(3) 		14.2
(0.4) 		4
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.7
(-2.4)
A 		5.4
(-2.2)
A 		5.2
(-2.2)
A 		4.9
(-2.4)
A 		3.3
(-3)
A 		18.3
(3)
A 		15
B 4.1
(-2)
A 		4.3
(-1.9)
A 		14
(3)
A 		2.2
(-3)
A 		5.5
(-1.3)
A 		4.7
(-1.7)
A 		12
C 12.1
(2.1)
A 		8.1
(0)
A 		7.7
(-0.2)
A 		13.8
(3)
A 		2.3
(-3)
A 		6.2
(-1)
A 		12
avr 7
(0.3) 		5.9
(-0.8) 		9
(2.3) 		7
(0.3) 		3.7
(-3) 		9.7
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5
(1.4)
A 		6.7
(3)
A 		2
(-1.5)
A 		0.5
(-3)
A 		6
B 2.5
(3)
A 		1.6
(-0.6)
A 		1
(-3)
A 		1.2
(-2.2)
A 		2
C 7.8
(1.3)
A 		8.1
(1.5)
A 		10.7
(3)
A 		0.5
(-3)
A 		10
avr 5.1
(2.5) 		5.5
(3) 		4.6
(1.9) 		0.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.9
(-1.3)
A 		1.1
(-2.7)
A 		1.2
(-2.5)
A 		1
(-2.8)
A 		4.5
(3)
A 		4
B 1.4
(-1.3)
A 		1.4
(-1.3)
A 		3.4
(3)
A 		0.6
(-3)
A 		2.2
(0.4)
A 		1.7
(-0.6)
A 		3
C 4.5
(3)
A 		2.5
(-0.2)
A 		2
(-0.9)
A 		2.8
(0.3)
A 		0.7
(-3)
A 		2.1
(-0.8)
A 		4
avr 2.3
(1) 		1.9
(-0.6) 		2.2
(0.6) 		1.5
(-2.2) 		1.3
(-3) 		2.8
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187414_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6453
Sequence Type Exemplar sequence
Representative Public ID F40H6.2 NCBI
Target Description F40H6.2 /REP_DB=WormBase Gene ID /WP=CE01279 /TR=SW:Q20256 /GB=AAA62519.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065915 NCBI Caenorhabditis elegans F40H6.2 (F40H6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000035898 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6039501:6045018:1 11/11 None
SNAP00000035887 ENSEMBL cdna:SNAP chromosome:CEL140:III:6039942:6045018:1 11/11 None
F40H6.2 ENSEMBL cdna:known chromosome:CEL140:III:6040276:6044379:1 gene:F40H6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6040274-6044378(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40H6.2
Entrez Gene 185574 Entrez gene
SwissProt Q20256 EMBL-EBI
WormBase CE01279 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62519 Hypothetical protein F40H6.2 [Caenorhabditis elegans] ref|NP_498316.1| F40H6.2 [Caenorhabditis elegans] sp|Q20256|YPX2_CAEEL Hypothetical protein F40H6.2 in chromosome III 0.0
blast CAE64407 Hypothetical protein CBG09099 [Caenorhabditis briggsae] 0.0
blast AAA62522 Hypothetical protein F40H6.5 [Caenorhabditis elegans] ref|NP_498318.1| F40H6.5 [Caenorhabditis elegans] sp|Q09277|YPX5_CAEEL Hypothetical protein F40H6.5 in chromosome III 0.0
Sequence
Target Sequence 
>C. ELEGANS:187414_AT
tctacggattccttccaactacaacgactattacaaagtctacagtgtcaacgactactg
caccgttgaatagattccgattgtcaccagtttacattatatacccgactgaatactatt
tacaaaatcaacaagaaggaagtcacgttgcaacacgtttaggttttattcaacatgatg
gcgctggtgtaacaaatgcatgtgttttcttgagtgacccaagtattgtggcactctgcg
gaacaacagctccactatatttatacttcgacagagttagagttgcttattttgttggaa
cacacagtgcaggccgtaacgtttcaattgagagggctgcaacagtttttgagtcggctg
gcaacacatgtgggttcaccctgttgccactgcgagaattctataaagatggcacaggat
ataatttgcacgccggagatgactacgaattactagtcaatggtggatttgtcgcaactg
ggaacatcatgggatatgcgccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACGGATTCCTTCCAACTACAAC 134 611 2384 Antisense
CAGTGTCAACGACTACTGCACCGTT 502 205 2426 Antisense
TAGATTCCGATTGTCACCAGTTTAC 176 651 2454 Antisense
TGCATGTGTTTTCTTGAGTGACCCA 314 579 2580 Antisense
GTGACCCAAGTATTGTGGCACTCTG 411 483 2597 Antisense
CACACAGTGCAGGCCGTAACGTTTC 606 193 2684 Antisense
GGGCTGCAACAGTTTTTGAGTCGGC 296 493 2717 Antisense
ACACATGTGGGTTCACCCTGTTGCC 690 109 2747 Antisense
CCCTGTTGCCACTGCGAGAATTCTA 664 259 2762 Antisense
ATTTGCACGCCGGAGATGACTACGA 686 15 2807 Antisense
GGAACATCATGGGATATGCGCCGGA 286 529 2864 Antisense
Sequence Source Affymetrix Proprietary Database