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[187413_at]

Description C04F6.2 /REP_DB=WormBase Gene ID /WP=CE03922 /TR=SW:Q11175 /GB=AAA83585.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 44      4grp_high_8_8 > 19      6grp_highest_nonorm > 90      6grp_total > 0      4grp_total > 28      6grp_total_sub > Hat      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 140.7
(-3)
P 		197.6
(3)
P 		143.6
(-2.7)
P 		144.1
(-2.6)
P 		57
B 184.2
(3)
P 		127.9
(-3)
P 		138.5
(-1.9)
P 		143.9
(-1.3)
P 		56
C 148.4
(-1.4)
P 		146
(-1.6)
P 		126
(-3)
A 		209.5
(3)
P 		84
avr 157.8
(1.4) 		157.2
(1.3) 		136
(-3) 		165.8
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 157.6
(1.1)
P 		171.4
(3)
P 		163.2
(1.9)
P 		127.8
(-3)
P 		147.3
(-0.3)
P 		150.2
(0.1)
P 		44
B 154.4
(0.5)
P 		182.1
(2.7)
P 		111.3
(-3)
P 		132
(-1.3)
P 		167.5
(1.5)
P 		185.6
(3)
P 		74
C 92.6
(-3)
P 		248.7
(3)
P 		170.6
(-0)
P 		141.5
(-1.1)
P 		124.5
(-1.8)
P 		172.3
(0.1)
P 		156
avr 134.9
(-2.9) 		200.7
(3) 		148.4
(-1.7) 		133.8
(-3) 		146.4
(-1.9) 		169.4
(0.2) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 51.2
(3)
P 		42.9
(1.3)
P 		37.5
(0.3)
P 		21.1
(-3)
P 		30
B 58.7
(3)
P 		31.6
(-2.8)
P 		32.1
(-2.7)
P 		30.7
(-3)
P 		28
C 49.1
(3)
P 		42
(-0.1)
P 		43.9
(0.7)
A 		35.3
(-3)
P 		14
avr 53
(3) 		38.8
(-0.6) 		37.8
(-0.8) 		29
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 29.1
(-3)
P 		61
(3)
P 		35.5
(-1.8)
P 		32.4
(-2.4)
P 		44.4
(-0.1)
P 		36.6
(-1.6)
P 		32
B 53.7
(0.8)
P 		60.6
(1.8)
P 		27
(-3)
P 		35
(-1.9)
P 		68.1
(2.8)
P 		69.2
(3)
P 		42
C 34.3
(-2.3)
P 		75.9
(3)
P 		43.4
(-1.1)
P 		28.5
(-3)
P 		40.3
(-1.5)
P 		57.7
(0.7)
P 		47
avr 39
(-1.8) 		65.8
(3) 		35.3
(-2.4) 		32
(-3) 		50.9
(0.4) 		54.5
(1) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18329
Sequence Type Exemplar sequence
Representative Public ID C04F6.2 NCBI
Target Description C04F6.2 /REP_DB=WormBase Gene ID /WP=CE03922 /TR=SW:Q11175 /GB=AAA83585.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076186 NCBI Caenorhabditis elegans C04F6.2 (C04F6.2) mRNA, complete cds. 11/11 None
SNAP00000029417 ENSEMBL cdna:SNAP chromosome:CEL140:X:3396839:3397455:1 11/11 None
GENEFINDER00000029429 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3396889:3397455:1 11/11 None
C04F6.2 ENSEMBL cdna:known chromosome:CEL140:X:3397139:3397455:1 gene:C04F6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3397139-3397456(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04F6.2
Entrez Gene 182224 Entrez gene
SwissProt Q11175 EMBL-EBI
WormBase CE03922 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83585 Hypothetical protein C04F6.2 [Caenorhabditis elegans] ref|NP_508587.1| C04F6.2 [Caenorhabditis elegans] sp|Q11175|YOK2_CAEEL Hypothetical protein C04F6.2 in chromosome X 4.0E-46
blast AAA83585 Hypothetical protein C04F6.2 [Caenorhabditis elegans] ref|NP_508587.1| C04F6.2 [Caenorhabditis elegans] sp|Q11175|YOK2_CAEEL Hypothetical protein C04F6.2 in chromosome X 6.0E-46
blast AAA83585 Hypothetical protein C04F6.2 [Caenorhabditis elegans] ref|NP_508587.1| C04F6.2 [Caenorhabditis elegans] sp|Q11175|YOK2_CAEEL Hypothetical protein C04F6.2 in chromosome X 1.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.0E-4
Pfam IPR005828 EMBL-EBI General substrate transporter 1.0E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508587.1 1 57-79
C04F6.2 1 57-79
SNAP00000029417 4 7-29,49-71,76-98,142-164
GENEFINDER00000029429 3 29-51,58-77,125-147
Sequence
Target Sequence 
>C. ELEGANS:187413_AT
gtgttacttacaaatggcttcccgaaactgcaggaaaaactccacaggaaatcaatcgtc
acttctcaccagagtttcctggaacaaatgtattcttatacttaaaacacaaagcctcga
aaacgttcgcatatctcagtggaaaaccggcgctgatgaactttatcagttttgtggtgc
agttggcgtgctgcatatttcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTACTTACAAATGGCTTCCCGA 355 485 32 Antisense
ACAAATGGCTTCCCGAAACTGCAGG 332 109 41 Antisense
GAAACTGCAGGAAAAACTCCACAGG 473 355 55 Antisense
AGGAAATCAATCGTCACTTCTCACC 485 55 77 Antisense
GTCACTTCTCACCAGAGTTTCCTGG 43 465 89 Antisense
GAGTTTCCTGGAACAAATGTATTCT 381 399 103 Antisense
GAAAACGTTCGCATATCTCAGTGGA 121 355 150 Antisense
GCATATCTCAGTGGAAAACCGGCGC 88 307 160 Antisense
GAAAACCGGCGCTGATGAACTTTAT 114 355 173 Antisense
ATCAGTTTTGTGGTGCAGTTGGCGT 617 27 196 Antisense
AGTTGGCGTGCTGCATATTTCTTCT 627 65 212 Antisense
Sequence Source Affymetrix Proprietary Database