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[187412_at]

Description C18H9.6 /REP_DB=WormBase Gene ID /WP=CE01806 /TR=SW:Q09238 /GB=AAC46690.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 50      6grp_total > 47      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 985
1 2 3 4 range
A 1682.7
(-0.6)
P 		1288.6
(-3)
P 		1491.5
(-1.8)
P 		2273.6
(3)
P 		985
B 1855
(3)
P 		1400
(-1.9)
P 		1299.4
(-3)
P 		1649.8
(0.8)
P 		556
C 1974.8
(2.9)
P 		1336.9
(-3)
P 		1370.8
(-2.7)
P 		1981.1
(3)
P 		644
avr 1837.5
(1.7) 		1341.8
(-3) 		1387.2
(-2.6) 		1968.2
(3) 		626

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 921
1 2 3 4 5 6 range
A 904
(2.6)
P 		589.9
(0.2)
P 		224.6
(-2.6)
P 		217.7
(-2.7)
P 		178.6
(-3)
P 		957.9
(3)
P 		779
B 1073.7
(3)
P 		650.9
(0.2)
P 		317.8
(-2)
P 		173.7
(-3)
P 		171.3
(-3)
P 		967.9
(2.3)
P 		902
C 1092.1
(3)
P 		561.8
(-0.7)
P 		244.9
(-2.9)
P 		277.3
(-2.7)
P 		227
(-3)
P 		1055.6
(2.7)
P 		865
avr 1023.3
(3) 		600.9
(-0) 		262.4
(-2.5) 		222.9
(-2.8) 		192.3
(-3) 		993.8
(2.8) 		831
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 374
1 2 3 4 range
A 612.7
(3)
P 		279.7
(-3)
P 		389.9
(-1)
P 		332.8
(-2)
P 		333
B 591.5
(3)
P 		345.8
(-2.1)
P 		301.1
(-3)
P 		351.6
(-2)
P 		290
C 653.7
(3)
P 		384.4
(-2.1)
P 		477.7
(-0.3)
P 		334
(-3)
P 		320
avr 619.3
(3) 		336.6
(-3) 		389.6
(-1.9) 		339.5
(-2.9) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 359
1 2 3 4 5 6 range
A 166.6
(0.8)
P 		209.8
(2.2)
P 		48.9
(-3)
P 		55.2
(-2.8)
P 		53.9
(-2.8)
P 		233.2
(3)
P 		184
B 373.6
(3)
P 		216.7
(0.1)
P 		77.2
(-2.4)
P 		46
(-3)
P 		69.6
(-2.6)
P 		360.9
(2.8)
P 		328
C 404.8
(3)
P 		171.4
(-1)
P 		62.3
(-2.9)
P 		55.8
(-3)
P 		73.4
(-2.7)
P 		353.4
(2.1)
P 		349
avr 315
(3) 		199.3
(0.3) 		62.8
(-2.8) 		52.3
(-3) 		65.6
(-2.7) 		315.8
(3) 		264
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187412_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4721
Sequence Type Exemplar sequence
Representative Public ID C18H9.6 NCBI
Target Description C18H9.6 /REP_DB=WormBase Gene ID /WP=CE01806 /TR=SW:Q09238 /GB=AAC46690.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062963(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062963 NCBI Caenorhabditis elegans C18H9.6 (C18H9.6) mRNA, complete cds. 11/11 None
SNAP00000038940 ENSEMBL cdna:SNAP chromosome:CEL140:II:6700900:6701355:-1 11/11 None
GENEFINDER00000038946 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6700613:6701355:-1 11/11 None
C18H9.6 ENSEMBL cdna:known chromosome:CEL140:II:6700900:6701355:-1 gene:C18H9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6700896-6701352(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18H9.6
Entrez Gene 182809 Entrez gene
SwissProt Q09238 EMBL-EBI
WormBase CE01806 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE66028 Hypothetical protein CBG11222 [Caenorhabditis briggsae] 1.0E-66
blast AAC46690 Hypothetical protein C18H9.6 [Caenorhabditis elegans] ref|NP_495364.1| C18H9.6 [Caenorhabditis elegans] sp|Q09238|YQ86_CAEEL Hypothetical protein C18H9.6 in chromosome II 1.0E-55
blast AAC46690 Hypothetical protein C18H9.6 [Caenorhabditis elegans] ref|NP_495364.1| C18H9.6 [Caenorhabditis elegans] sp|Q09238|YQ86_CAEEL Hypothetical protein C18H9.6 in chromosome II 5.0E-55
blast CAE66028 Hypothetical protein CBG11222 [Caenorhabditis briggsae] 3.0E-49
blast CAE66043 Hypothetical protein CBG11242 [Caenorhabditis briggsae] 3.0E-11
blast CAE66043 Hypothetical protein CBG11242 [Caenorhabditis briggsae] 1.0E-10
Sequence
Target Sequence 
>C. ELEGANS:187412_AT
atgacaaagcttccacaaacacagggagttcttaatttcattcagaaatatctttacaat
tctacaaactacaattttgaagatgggagcactcaagctattaatgtaccatatccagat
tcaggtgtctatgaaaattacatacttcattatccagatgctacgagcactgaacttttg
gacataaatattgatcaattatacagtgaagttatggttctgactgacccaaagattgag
agagcatatgaatatattcttgaggaacgcgatccaggaacttcatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACAAAGCTTCCACAAACACAGG 62 45 13 Antisense
ACAGGGAGTTCTTAATTTCATTCAG 551 105 33 Antisense
ATATCTTTACAATTCTACAAACTAC 674 19 60 Antisense
AGCACTCAAGCTATTAATGTACCAT 116 77 100 Antisense
GTACCATATCCAGATTCAGGTGTCT 549 457 118 Antisense
CATACTTCATTATCCAGATGCTACG 558 213 153 Antisense
GCTACGAGCACTGAACTTTTGGACA 584 301 172 Antisense
GAAGTTATGGTTCTGACTGACCCAA 517 335 220 Antisense
GGTTCTGACTGACCCAAAGATTGAG 326 507 228 Antisense
GAATATATTCTTGAGGAACGCGATC 268 325 262 Antisense
GAACGCGATCCAGGAACTTCATCCA 237 347 277 Antisense
Sequence Source Affymetrix Proprietary Database