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[187411_at]

Description F26A1.2 /REP_DB=WormBase Gene ID /WP=CE02683 /TR=SW:Q19802 /GB=AAA68254.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 02      6grp_cgc > 29      6grp_cgc_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 5.4
(-2.8)
A 		8.5
(-2.2)
A 		4.7
(-3)
A 		32.6
(3)
A 		28
B 6.6
(-0.4)
A 		3.6
(-3)
A 		9.6
(2.3)
A 		10.4
(3)
A 		7
C 3.3
(-2.8)
A 		4.4
(-2.7)
A 		2.1
(-3)
A 		44.9
(3)
A 		43
avr 5.1
(-3) 		5.5
(-2.9) 		5.5
(-2.9) 		29.3
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.2
(-3)
A 		5.1
(-2.3)
A 		3
(-2.8)
A 		3.1
(-2.8)
A 		20.3
(1.4)
A 		26.9
(3)
A 		25
B 5.4
(1.6)
A 		3.8
(-3)
A 		5.9
(3)
A 		5.3
(1.3)
A 		5
(0.4)
A 		4.5
(-1)
A 		2
C 9.9
(-1)
A 		22.4
(2.7)
A 		3.1
(-3)
A 		10.2
(-0.9)
A 		8.8
(-1.3)
A 		23.3
(3)
A 		20
avr 5.8
(-2.2) 		10.4
(-0.3) 		4
(-3) 		6.2
(-2.1) 		11.4
(0.1) 		18.2
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2
(-1.7)
A 		1.9
(-1.8)
A 		1.2
(-3)
A 		4.8
(3)
A 		4
B 2.1
(2.5)
A 		0.9
(-3)
A 		2.2
(3)
A 		2.2
(3)
A 		1
C 1.1
(-2.7)
A 		1.3
(-2.5)
A 		0.7
(-3)
A 		7.6
(3)
A 		7
avr 1.7
(-2.5) 		1.4
(-3) 		1.4
(-3) 		4.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.8
(-1.6)
A 		0.6
(-2.8)
A 		0.8
(-2.6)
A 		6.1
(2.5)
A 		6.6
(3)
A 		6
B 1.9
(2.1)
A 		1.3
(-3)
A 		1.4
(-2.1)
A 		1.4
(-2.1)
A 		2
(3)
A 		1.7
(0.4)
A 		1
C 3.7
(-0.5)
A 		6.8
(2.1)
A 		0.8
(-3)
A 		2.1
(-1.9)
A 		2.8
(-1.3)
A 		7.8
(3)
A 		7
avr 2
(-1.5) 		3.3
(0.2) 		0.9
(-3) 		1.4
(-2.3) 		3.6
(0.6) 		5.4
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187411_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6139
Sequence Type Exemplar sequence
Representative Public ID F26A1.2 NCBI
Target Description F26A1.2 /REP_DB=WormBase Gene ID /WP=CE02683 /TR=SW:Q19802 /GB=AAA68254.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065602 NCBI Caenorhabditis elegans ForKHead transcription factor family member (fkh-5) (fkh-5) mRNA, complete cds. 11/11 None
GENEFINDER00000001891 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4844623:4846507:1 11/11 None
SNAP00000001881 ENSEMBL cdna:SNAP chromosome:CEL140:III:4844740:4846507:1 11/11 None
F26A1.2 ENSEMBL cdna:known chromosome:CEL140:III:4844623:4846507:1 gene:F26A1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4844622-4846507(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol fkh-5
Ensembl F26A1.2
Entrez Gene 184944 Entrez gene
SwissProt Q19802 EMBL-EBI
WormBase CE02683 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498003 ForKHead transcription factor family member (fkh-5) [Caenorhabditis elegans] gb|AAA68254.1| Forkhead transcription factor family protein 5 [Caenorhabditis elegans] sp|Q19802|FKH5_CAEEL Putative forkhead-related transcription factor fkh-5 0.0
blast CAB07323 Hypothetical protein C29F7.5 [Caenorhabditis elegans] ref|NP_510238.1| ForKHead transcription factor family member (fkh-4) [Caenorhabditis elegans] 1.0E-66
blast CAB07323 Hypothetical protein C29F7.5 [Caenorhabditis elegans] ref|NP_510238.1| ForKHead transcription factor family member (fkh-4) [Caenorhabditis elegans] 2.0E-66
blast CAB07324 Hypothetical protein C29F7.4 [Caenorhabditis elegans] ref|NP_510237.1| ForKHead transcription factor family member (fkh-3) [Caenorhabditis elegans] 4.0E-66
Protein Domains
Database ID Description E-Value
scop a.4.5.Forkhead DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Forkhead DNA-binding domain 7.00000005186224E-17
scop a.4.5.Forkhead DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Forkhead DNA-binding domain 7.99999987020127E-17
scop a.4.5.Forkhead DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Forkhead DNA-binding domain 1.00000001686238E-16
Pfam IPR001766 EMBL-EBI Fork head transcription factor 2.7E-9
Pfam IPR001766 EMBL-EBI Fork head transcription factor 2.7E-9
Pfam IPR001766 EMBL-EBI Fork head transcription factor 2.7E-9
Sequence
Target Sequence 
>C. ELEGANS:187411_AT
caaaatgctcgctggccaaatcggtcttcctcgtcatctcttctacagtattgtcggaaa
tgaaatgccagaatacgcgggaccagagaattcagccatcttctatcatctgctttcgat
gcggaaaatcattccaaaactcgagacacgatatttcctggagcattggcaaatggagca
caaggcaacggagccaatgtttttcgaagagtttgtaccatattctacatcattggtgtc
ttgtgttgagaacattagctcatatggtgaaggtgttggtccgggaaatgatgagctata
tgatttgagtgataggcaaattatttgtttccataagaatatccgtgcttatcattcact
tcaaaaaagatgccataaaatgaattattcaaattggatgactccatcactgatttatgt
ccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAATGCTCGCTGGCCAAATCGGT 478 183 843 Antisense
TCGTCATCTCTTCTACAGTATTGTC 224 605 873 Antisense
GAAATGCCAGAATACGCGGGACCAG 37 363 904 Antisense
GGGACCAGAGAATTCAGCCATCTTC 486 495 921 Antisense
TCTTCTATCATCTGCTTTCGATGCG 486 617 941 Antisense
GAGACACGATATTTCCTGGAGCATT 317 393 985 Antisense
AGGCAACGGAGCCAATGTTTTTCGA 460 49 1025 Antisense
TCTACATCATTGGTGTCTTGTGTTG 647 613 1066 Antisense
GGTGAAGGTGTTGGTCCGGGAAATG 229 493 1108 Antisense
ATATCCGTGCTTATCATTCACTTCA 332 21 1181 Antisense
GACTCCATCACTGATTTATGTCCAA 283 375 1242 Antisense
Sequence Source Affymetrix Proprietary Database