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[187410_at] Histone

Description F55G1.11 /REP_DB=WormBase Gene ID /WP=CE07287 /GB=AAB00649.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=Histone
Cluster 6grp_high1_10_10 > 95      4grp_high_8_8 > 39      6grp_total > 86      4grp_total > 33      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 50.4
(-3)
A 		156.6
(0.5)
P 		234.5
(3)
P 		215.9
(2.4)
P 		184
B 96
(-3)
P 		210.6
(2.8)
P 		214.1
(3)
P 		171.4
(0.8)
P 		118
C 22.8
(-3)
A 		171.5
(2)
P 		202.5
(3)
P 		182.7
(2.3)
P 		180
avr 56.4
(-3) 		179.6
(1.6) 		217
(3) 		190
(2) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 76.8
(-3)
A 		88.9
(-2.6)
P 		86.8
(-2.7)
P 		110.3
(-1.9)
P 		124.6
(-1.4)
P 		252.5
(3)
P 		176
B 55.7
(-2.4)
A 		76.5
(-1.6)
P 		40.2
(-3)
A 		119.9
(0.1)
M 		75.1
(-1.6)
P 		192.3
(3)
P 		152
C 89.2
(-3)
P 		109.3
(-1.7)
P 		117.6
(-1.2)
P 		183.6
(3)
P 		161.3
(1.6)
P 		131.3
(-0.3)
P 		94
avr 73.9
(-3) 		91.6
(-2.1) 		81.5
(-2.6) 		137.9
(0.3) 		120.3
(-0.6) 		192
(3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 18.4
(-3)
A 		34
(-0.8)
P 		61.3
(3)
P 		31.6
(-1.2)
P 		43
B 30.6
(-3)
P 		52
(3)
P 		49.6
(2.3)
P 		36.5
(-1.3)
P 		21
C 7.6
(-3)
A 		49.3
(1)
P 		70.6
(3)
P 		30.8
(-0.8)
P 		63
avr 18.9
(-3) 		45.1
(0.8) 		60.5
(3) 		33
(-1) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 14.2
(-3)
A 		31.6
(-0.8)
P 		18.9
(-2.4)
P 		28
(-1.2)
P 		37.6
(-0)
P 		61.5
(3)
P 		47
B 19.4
(-2.1)
A 		25.5
(-1.5)
P 		9.8
(-3)
A 		31.8
(-0.9)
M 		30.5
(-1)
P 		71.7
(3)
P 		62
C 33.1
(-2.1)
P 		33.3
(-2.1)
P 		29.9
(-3)
P 		36.9
(-1.1)
P 		52.2
(3)
P 		44
(0.8)
P 		22
avr 22.2
(-2.6) 		30.1
(-1.4) 		19.5
(-3) 		32.2
(-1.1) 		40.1
(0.1) 		59.1
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187410_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8481
Sequence Type Exemplar sequence
Representative Public ID F55G1.11 NCBI
Target Description F55G1.11 /REP_DB=WormBase Gene ID /WP=CE07287 /GB=AAB00649.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=Histone
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068802 NCBI Caenorhabditis elegans F55G1.11 (Histone) mRNA, complete cds. 11/11 None
SNAP00000005173 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7487665:7488021:-1 11/11 None
F55G1.11 ENSEMBL cdna:known chromosome:CEL140:IV:7487625:7488021:-1 gene:F55G1.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005186 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11338453-11338810(+) 94.96 94.96
chrIV:11407047-11407404(+) 94.4 94.4
chrIV:7487670-7488027(-) 100.0 100.0
chrIV:11325994-11326351(-) 94.96 94.96
Public Domain and Genome References
Gene Title Histone
Gene Symbol his-60
Ensembl F55G1.11
Entrez Gene 177522 Entrez gene
SwissProt P62784 EMBL-EBI
WormBase CE07287 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261408_S_AT histone H4 at
ATH1-121501:247692_S_AT histone H4 at
CANINE_2:CFAAFFX.251.1.S1_S_AT similar to germinal histone H4 gene cfa
HG-U133_PLUS_2:208026_AT histone 1, H4f hs
HG-U133A:208026_AT histone 1, H4f hs
HG-FOCUS:208026_AT histone 1, H4f hs
HG-U133A_2:208026_AT histone 1, H4f hs
U133_X3P:G5579464_3P_AT histone 1, H4f hs
MOE430A:1422948_S_AT histone 1, H4i mm
MOUSE430A_2:1422948_S_AT histone 1, H4i mm
MOUSE430_2:1422948_S_AT histone 1, H4i mm
MOE430A:1424854_AT histone 1, H4i mm
MOUSE430A_2:1424854_AT histone 1, H4i mm
MOUSE430_2:1424854_AT histone 1, H4i mm
MU19KSUBA:TC14414_AT Histone 1, H4i, mRNA (cDNA clone MGC:106611 IMAGE:30612926) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6334 nucleosome assembly inferred from electronic annotation QuickGO AmiGO
7001 chromosome organization and biogenesis (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
786 nucleosome inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00649 Histone protein 60 [Caenorhabditis elegans] ref|NP_501203.1| F55G1.11 [Caenorhabditis elegans] pir||T29230 hypothetical protein F55G1.11 - Caenorhabditis elegans 9.0E-48
blast CAB05839 Hypothetical protein ZK131.8 [Caenorhabditis elegans] emb|CAB05837.1| Hypothetical protein ZK131.4 [Caenorhabditis elegans] emb|CAB05835.4| Hypothetical protein ZK131.1 [Caenorhabditis elegans] emb|CAB03396.1| Hypothetical protein T23D8.5 [Caenorhabditis elegans] emb|CAA94742.1| Hypothetical protein C50F4.7 [Caenorhabditis elegans] emb|CAA97407.1| Hypothetical protein B0035.9 [Caenorhabditis elegans] emb|CAA92734.1| Hypothetical protein F22B3.1 [Caenorhabditis elegans] emb|CAB07657.1| Hypothetical protein T10C6.14 [Caenorhabditis elegans] emb|CAB05210.1| Hypothetical protein F54E12.3 [Caenorhabditis elegans] gb|AAC05101.1| Histone protein 31 [Caenorhabditis elegans] gb|AAK84518.1| Histone protein 50 [Caenorhabditis elegans] gb|AAF98220.1| Histone protein 28 [Caenorhabditis elegans] gb|AAF98223.1| Histone protein 18 [Caenorhabditis elegans] gb|AAA83329.1| Histone protein 38 [Caenorhabditis elegans] emb|CAA24645.1| unnamed protein product [Strongylocentrotus purpuratus] emb|CAA38053.1| histone H4 [Pycnopodia helianthoides] emb|CAA38051.1| histone H4 [Pisaster ochraceus] emb|CAA38049.1| H4 histone [Pisaster brevispinus] emb|CAA33643.1| Histone protein [Caenorhabditis elegans] emb|CAA27581.1| unnamed protein product [Strongylocentrotus purpuratus] emb|CAA25241.1| unnamed protein product [Lytechinus pictus] gb|AAC48026.1| Histone protein 5 [Caenorhabditis elegans] ref|NP_509231.1| K03A1.6 [Caenorhabditis elegans] ref|NP_501406.1| HIStone family member (his-31) [Caenorhabditis elegans] ref|NP_496893.1| HIStone family member (his-10) [Caenorhabditis elegans] ref|NP_507034.1| HIStone family member (his-1) [Caenorhabditis elegans] ref|NP_492641.1| HIStone family member (his-67) [Caenorhabditis elegans] ref|NP_505466.1| HIStone family member (his-37) [Caenorhabditis elegans] ref|NP_505298.1| HIStone family member (his-18) [Caenorhabditis elegans] ref|NP_505291.1| HIStone family member (his-28) [Caenorhabditis elegans] ref|NP_505275.1| HIStone family member (his-50) [Caenorhabditis elegans] ref|NP_505200.1| HIStone family member (his-5) [Caenorhabditis elegans] ref|NP_502154.1| HIStone family member (his-64) [Caenorhabditis elegans] ref|NP_502139.1| HIStone family member (his-56) [Caenorhabditis elegans] ref|NP_502133.1| HIStone family member (his-46) [Caenorhabditis elegans] ref|NP_496896.1| HIStone family member (his-26) [Caenorhabditis elegans] ref|NP_496889.1| HIStone family member (his-14) [Caenorhabditis elegans] ref|XP_780884.1| PREDICTED: similar to histone (his-67) [Strongylocentrotus purpuratus] ref|XP_781796.1| PREDICTED: similar to histone (his-67) [Strongylocentrotus purpuratus] ref|NP_999707.1| H4 histone protein [Strongylocentrotus purpuratus] ref|NP_999716.1| late histone gene L1 H4 [Strongylocentrotus purpuratus] ref|NP_999715.1| late histone gene L2 H4 [Strongylocentrotus purpuratus] ref|NP_999713.1| late embryonic histone H4 [Strongylocentrotus purpuratus] sp|P62779|H4_PYCHE Histone H4 sp|P62778|H4_PISOC Histone H4 sp|P62777|H4_PISBR Histone H4 sp|P62780|H4_PARLI Histone H4 sp|P62782|H4_LYTPI Histone H4 sp|P62776|H4_HOLTU Histone H4 sp|P62784|H4_CAEEL Histone H4 emb|CAE60210.1| Hypothetical protein CBG03774 [Caenorhabditis briggsae] emb|CAE72198.1| Hypothetical protein CBG19306 [Caenorhabditis briggsae] emb|CAE62043.1| Hypothetical protein CBG06059 [Caenorhabditis briggsae] emb|CAE62040.1| Hypothetical protein CBG06056 [Caenorhabditis briggsae] emb|CAE61894.1| Hypothetical protein CBG05885 [Caenorhabditis briggsae] emb|CAE61864.1| Hypothetical protein CBG05842 [Caenorhabditis briggsae] emb|CAE61861.1| Hypothetical protein CBG05839 [Caenorhabditis briggsae] emb|CAE75444.1| Hypothetical protein CBG23438 [Caenorhabditis briggsae] emb|CAE58375.1| Hypothetical protein CBG01504 [Caenorhabditis briggsae] emb|CAE58373.1| Hypothetical protein CBG01500 [Caenorhabditis briggsae] gb|AAB48834.1| cleavage stage histone H4 [Psammechinus miliaris] pir||S01618 histone H4, embryonic (clones L1 and L2) - sea urchin (Strongylocentrotus purpuratus) emb|CAA86298.1| histone H4 [Holothuria tubulosa] emb|CAA29849.1| unnamed protein product [Strongylocentrotus purpuratus] emb|CAA29847.1| unnamed protein product [Strongylocentrotus purpuratus] emb|CAA76307.1| histone H4 [Paracentrotus lividus] emb|CAA25630.1| histone H4 (aa 1-103) [Psammechinus miliaris] sp|P62783|H4_STRPU Histone H4 sp|P62781|H4_PSAMI Histone H4 gb|AAA69664.1| histone gb|AAA30024.1| histone H4 gb|AAA30002.1| histone H4 prf||2209257B histone H4 7.0E-40
blast HSUR4P histone H4, embryonic - sea urchin (Strongylocentrotus purpuratus) pir||HSUR4 histone H4 - sea urchin (Psammechinus miliaris) pir||S68537 histone H4 - starfish (Asterina pectinifera) gb|AAA30054.1| H4 histone protein 7.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR007125 EMBL-EBI Histone core 5.3E-13
Sequence
Target Sequence 
>C. ELEGANS:187410_AT
tcattccttcatctcacttgtgagtcttcaactgaatcaacaatgtccggacgtggaaag
ggaggaaaaggcctcggaaaaggaggtgccaagcgccatcgtaaggttctccgtgataac
atccaaggtatcaccaagccagccatccgtcgtctcgctagaagaggaggagtcaagaga
atttctggattgatctacgaggaaacccgtggagtcttgaaggtattccttgagaatgtc
atccgtgatgctgtcacttactgcgagcacgccaagagaaagaccgtaaccgccatggat
gtcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTCCTTCATCTCACTTGTGAGT 593 619 16 Antisense
TCTCACTTGTGAGTCTTCAACTGAA 672 611 27 Antisense
CACTTGTGAGTCTTCAACTGAATCA 74 197 30 Antisense
ACTGAATCAACAATGTCCGGACGTG 358 97 46 Antisense
TGAATCAACAATGTCCGGACGTGGA 180 575 48 Antisense
GCCATCGTAAGGTTCTCCGTGATAA 265 281 110 Antisense
CATCCGTCGTCTCGCTAGAAGAGGA 270 211 159 Antisense
TCCGTCGTCTCGCTAGAAGAGGAGG 404 593 161 Antisense
GTCTTGAAGGTATTCCTTGAGAATG 126 467 229 Antisense
GAAAGACCGTAACCGCCATGGATGT 304 359 293 Antisense
GACCGTAACCGCCATGGATGTCGTC 367 379 297 Antisense
Sequence Source Affymetrix Proprietary Database