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[187407_s_at]

Description B0495.5 /REP_DB=WormBase Gene ID /WP=CE01763 /TR=SW:Q09214 /GB=AAA62531.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_high_8_8 > 10      6grp_highest_nonorm > 72      6grp_total > 85      4grp_total > 15      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 343.6
(3)
P 		270.4
(0.2)
P 		186.7
(-3)
P 		302.9
(1.4)
P 		157
B 296.4
(3)
P 		160.8
(-3)
P 		161.2
(-3)
P 		294.3
(2.9)
P 		136
C 282
(1.3)
P 		89.3
(-3)
A 		246
(0.5)
P 		360.3
(3)
P 		271
avr 307.3
(2.5) 		173.5
(-3) 		198
(-2) 		319.2
(3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 175.7
(-3)
P 		372.8
(0.7)
P 		322.3
(-0.2)
P 		448.2
(2.1)
P 		428.1
(1.8)
P 		494
(3)
P 		318
B 209.6
(-3)
P 		222.1
(-2.8)
P 		409.2
(0.2)
P 		587.5
(3)
P 		328.5
(-1.1)
P 		494.2
(1.5)
P 		378
C 158.5
(-3)
P 		279.1
(-0.8)
P 		271.3
(-0.9)
P 		446.2
(2.3)
P 		388.6
(1.3)
P 		482.4
(3)
P 		324
avr 181.3
(-3) 		291.3
(-0.9) 		334.3
(-0.1) 		494
(3) 		381.7
(0.8) 		490.2
(2.9) 		313
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 125.1
(3)
P 		58.7
(-1.9)
P 		48.8
(-2.7)
P 		44.3
(-3)
P 		81
B 94.5
(3)
P 		39.7
(-2.8)
P 		37.4
(-3)
P 		62.7
(-0.3)
P 		57
C 93.3
(3)
P 		25.7
(-3)
A 		85.7
(2.3)
P 		60.7
(0.1)
P 		68
avr 104.3
(3) 		41.4
(-3) 		57.3
(-1.5) 		55.9
(-1.6) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 32.4
(-3)
P 		132.6
(3)
P 		70.2
(-0.7)
P 		113.7
(1.9)
P 		129.2
(2.8)
P 		120.3
(2.3)
P 		100
B 72.9
(-3)
P 		73.9
(-2.9)
P 		99.4
(-1.6)
P 		155.6
(1.5)
P 		133.5
(0.3)
P 		184.3
(3)
P 		111
C 58.7
(-3)
P 		85.2
(-1.5)
P 		69.1
(-2.4)
P 		89.7
(-1.2)
P 		125.7
(0.9)
P 		161.5
(3)
P 		103
avr 54.7
(-3) 		97.2
(-0.5) 		79.6
(-1.5) 		119.7
(0.9) 		129.5
(1.5) 		155.4
(3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187407_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4249
Sequence Type Exemplar sequence
Representative Public ID B0495.5 NCBI
Target Description B0495.5 /REP_DB=WormBase Gene ID /WP=CE01763 /TR=SW:Q09214 /GB=AAA62531.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063214(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063214 NCBI Caenorhabditis elegans B0495.5 (B0495.5) mRNA, complete cds. 11/11 None
SNAP00000031530 ENSEMBL cdna:SNAP chromosome:CEL140:II:7695926:7698399:-1 11/11 None
GENEFINDER00000031539 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7695926:7698399:-1 11/11 None
B0495.5.1 ENSEMBL cdna:known chromosome:CEL140:II:7695861:7698410:-1 gene:B0495.5 11/11 None
B0495.5.2 ENSEMBL cdna:known chromosome:CEL140:II:7695861:7698422:-1 gene:B0495.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7695922-7698467(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0495.5
Entrez Gene 174243 Entrez gene
SwissProt Q09214 EMBL-EBI
WormBase CE29948 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12651_AT expressed protein at
ATH1-121501:255418_AT expressed protein at
CANINE:1589778_AT similar to sperm protein SSP411 cfa
CANINE_2:CFA.7940.1.A1_AT similar to sperm protein SSP411 cfa
CANINE_2:CFA.7940.1.A1_S_AT similar to sperm protein SSP411 cfa
DROSOPHILA_2:1632731_AT dm
DROSGENOME1:152509_AT dm
CHICKEN:GGAAFFX.22075.1.S1_S_AT spermatogenesis associated 20 gga
HG-U133_PLUS_2:218164_AT spermatogenesis associated 20 hs
HG-U133A:218164_AT spermatogenesis associated 20 hs
HG-U133A_2:218164_AT spermatogenesis associated 20 hs
HU35KSUBC:RC_R48594_S_AT spermatogenesis associated 20 hs
HU35KSUBC:RC_AA621245_F_AT spermatogenesis associated 20 hs
U133_X3P:G12383067_3P_AT spermatogenesis associated 20 hs
HG-U95B:48037_AT spermatogenesis associated 20 hs
HU35KSUBC:RC_C20992_AT Spermatogenesis associated 20 hs
HU35KSUBD:RC_W67789_AT Spermatogenesis associated 20 hs
MG-U74BV2:107780_AT spermatogenesis associated 20 mm
RAE230B:1394403_AT sperm protein SSP411 rn
RAT230_2:1394403_AT sperm protein SSP411 rn
RAE230B:1392428_AT sperm protein SSP411 rn
RAT230_2:1392428_AT sperm protein SSP411 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA62531 Hypothetical protein B0495.5 [Caenorhabditis elegans] ref|NP_495615.2| B0495.5 [Caenorhabditis elegans] sp|Q09214|YP65_CAEEL Hypothetical protein B0495.5 in chromosome II 0.0
blast A88216 protein B0495.5 [imported] - Caenorhabditis elegans 0.0
blast CAE67517 Hypothetical protein CBG13036 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004879 EMBL-EBI Protein of unknown function DUF255 2.1E-48
Sequence
Target Sequence 
>C. ELEGANS:187407_S_AT
aagctcttttggatctctatacaacagttggcaaagatgaatatctcaagaaagccgttg
agcttcagaaaatttgtgatgtaaagttctggaacggaaatggatacttcatcagcgaga
aaaccgatgaagatgtttctgtgagaatgattgaagatcaagatggagcagagcccacag
ccacttcaatcgcatcaaacaaccttcttaggctttatgacattcttgaaaaggaggaat
atcgtgagaaggcgaatcagtgtttccggggagcttcagagcgactgaatacggtcccaa
tcgccctaccaaaaatggcagtcgcacttcatcgatggcaaattggatctaccacatttg
ttctcgttggtgatccgaaatctgaacttttgtccgaaactcgaagccgactgaatcaaa
agttcttgaataacctgtctgttgtacatattcaatcagaagaagatttgtcagcatcgg
gaccttctcataaggcaatggctgaaggaccgaaacctgcagtgtacatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTCTTTTGGATCTCTATACAAC 201 151 1580 Antisense
CAAGATGGAGCAGAGCCCACAGCCA 120 185 1738 Antisense
ACAGCCACTTCAATCGCATCAAACA 448 109 1756 Antisense
AACCTTCTTAGGCTTTATGACATTC 599 147 1780 Antisense
GAAGGCGAATCAGTGTTTCCGGGGA 350 333 1827 Antisense
TTCCGGGGAGCTTCAGAGCGACTGA 21 685 1843 Antisense
AAAATGGCAGTCGCACTTCATCGAT 329 133 1891 Antisense
TGGATCTACCACATTTGTTCTCGTT 161 551 1923 Antisense
ATCTGAACTTTTGTCCGAAACTCGA 480 33 1959 Antisense
TCAGCATCGGGACCTTCTCATAAGG 163 625 2050 Antisense
GGACCGAAACCTGCAGTGTACATGT 82 523 2086 Antisense
Sequence Source Affymetrix Proprietary Database