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[187406_s_at]

Description F19F10.11B /REP_DB=WormBase Gene ID /WP=CE09492 /TR=O01526 /GB=AAB52290.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 86      6grp_total > 69      4grp_total > 31      6grp_high1_sub > In      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 163.7
(3)
P 		62.4
(-3)
A 		106.7
(-0.4)
A 		104.6
(-0.5)
A 		101
B 171.6
(3)
P 		129.3
(-3)
P 		135.4
(-2.1)
A 		159.9
(1.3)
A 		42
C 165.3
(3)
P 		143.6
(-3)
M 		143.6
(-3)
P 		154
(-0.1)
A 		22
avr 166.9
(3) 		111.8
(-3) 		128.6
(-1.2) 		139.5
(0) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 183.5
(0.2)
P 		155.2
(-0.5)
P 		56
(-3)
A 		161.8
(-0.4)
P 		188
(0.3)
P 		296.5
(3)
P 		241
B 176.2
(-0.7)
P 		143.9
(-2.2)
P 		128.5
(-3)
M 		172.5
(-0.8)
P 		128
(-3)
P 		251.8
(3)
P 		124
C 148.4
(-3)
P 		164.5
(-1.8)
P 		202.8
(1.1)
P 		158.7
(-2.2)
P 		217.1
(2.2)
P 		228.1
(3)
P 		80
avr 169.4
(-1.1) 		154.5
(-1.8) 		129.1
(-3) 		164.3
(-1.4) 		177.7
(-0.8) 		258.8
(3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 59.6
(3)
P 		13.5
(-3)
A 		27.9
(-1.1)
A 		15.3
(-2.8)
A 		46
B 54.7
(3)
P 		31.9
(-2.9)
P 		31.4
(-3)
A 		34.1
(-2.3)
A 		23
C 54.7
(3)
P 		41.3
(0.2)
M 		50.1
(2)
P 		26
(-3)
A 		29
avr 56.3
(3) 		28.9
(-2.3) 		36.5
(-0.8) 		25.1
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 33.8
(-0.8)
P 		55.2
(1.3)
P 		12.2
(-3)
A 		41
(-0.1)
P 		56.7
(1.5)
P 		72.2
(3)
P 		60
B 61.3
(-0.1)
P 		47.9
(-1.4)
P 		31.2
(-3)
M 		45.7
(-1.6)
P 		52
(-1)
P 		93.9
(3)
P 		63
C 55
(0.1)
P 		50.2
(-0.5)
P 		51.6
(-0.3)
P 		31.9
(-3)
P 		70.2
(2.2)
P 		76.4
(3)
P 		45
avr 50
(-0.8) 		51.1
(-0.6) 		31.7
(-3) 		39.5
(-2) 		59.6
(0.4) 		80.8
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187406_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11284
Sequence Type Exemplar sequence
Representative Public ID F19F10.11B NCBI
Target Description F19F10.11B /REP_DB=WormBase Gene ID /WP=CE09492 /TR=O01526 /GB=AAB52290.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072554(11), NM_072555(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072554 NCBI Caenorhabditis elegans F19F10.11a (F19F10.11) mRNA, complete cds. 11/11 A 
NM_072555 NCBI Caenorhabditis elegans F19F10.11b (F19F10.11) mRNA, complete cds. 11/11 None
F19F10.11a ENSEMBL cdna:known chromosome:CEL140:V:7584065:7590190:-1 gene:F19F10.11 11/11 A 
F19F10.11b ENSEMBL cdna:known chromosome:CEL140:V:7585026:7590190:-1 gene:F19F10.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7585064-7590191(-) 100.0 100.0
Public Domain and Genome References
Ensembl F19F10.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52289 Hypothetical protein F19F10.11a [Caenorhabditis elegans] ref|NP_504955.1| F19F10.11a [Caenorhabditis elegans] pir||T25715 hypothetical protein F19F10.11a - Caenorhabditis elegans 0.0
blast AAB52290 Hypothetical protein F19F10.11b [Caenorhabditis elegans] ref|NP_504956.1| F19F10.11b [Caenorhabditis elegans] pir||T25716 hypothetical protein F19F10.11b - Caenorhabditis elegans 0.0
blast AAB52288 Hypothetical protein F19F10.10 [Caenorhabditis elegans] ref|NP_504954.1| F19F10.10 [Caenorhabditis elegans] 1.0E-113
Sequence
Target Sequence 
>C. ELEGANS:187406_S_AT
tcgcttgtccagctgttgcaattgatgcgaattattttgttggtgagggaagtggtagtt
tggtaagagcctgcaatatgtatcgagatgaagtggaactggccgcctatttgaatgctg
ccgccgttgagcaacagtatcgtggaattggttttcgatatgaagaagacgagggtgaaa
gtaatacgacagacgctggagacaaaccatcaacctctggagcatctaccagcagcagag
cgccaaagcgtagtttagaagctcggaactccttcactgaacaagtaccgccaaagcgac
tcgcagaatcatttatcgagccggttaggattccggaaattcgaagctctcaacaattga
tagctggtccatcagaaacacttgataaagatgtgaaacaggaaccaatagagactgaag
aatttgaaaagatatatgtgaaacgcgaggccgttgaagaggatgaagaatactttgtgg
agagagaaattcctgcaccgtcgctatccccgccagctgaaatacttgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTTGTCCAGCTGTTGCAATTGA 590 599 2027 Antisense
TGGCCGCCTATTTGAATGCTGCCGC 239 545 2126 Antisense
CTGCCGCCGTTGAGCAACAGTATCG 471 237 2144 Antisense
AACCATCAACCTCTGGAGCATCTAC 633 147 2231 Antisense
TACCAGCAGCAGAGCGCCAAAGCGT 23 651 2253 Antisense
TTAGAAGCTCGGAACTCCTTCACTG 58 683 2281 Antisense
CTCCTTCACTGAACAAGTACCGCCA 284 235 2295 Antisense
GTACCGCCAAAGCGACTCGCAGAAT 30 457 2311 Antisense
GCAGAATCATTTATCGAGCCGGTTA 515 313 2329 Antisense
GGAGAGAGAAATTCCTGCACCGTCG 623 517 2505 Antisense
ATCCCCGCCAGCTGAAATACTTGAG 309 23 2532 Antisense
Sequence Source Affymetrix Proprietary Database