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[187405_at]

Description C04E7.3 /REP_DB=WormBase Gene ID /WP=CE03920 /TR=SW:Q11194 /GB=AAA82328.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 39.5
(-1.1)
M 		83.7
(3)
A 		19.5
(-3)
A 		79.1
(2.6)
A 		64
B 54.4
(0.1)
P 		5.1
(-3)
A 		72.7
(1.3)
A 		100.2
(3)
M 		95
C 57.3
(0.8)
A 		5.2
(-3)
A 		58.5
(0.9)
A 		86.9
(3)
M 		82
avr 50.4
(-1) 		31.3
(-3) 		50.2
(-1) 		88.7
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 6.7
(-3)
A 		7
(-2.9)
A 		33.4
(3)
A 		27.9
(1.8)
A 		22
(0.4)
A 		10.9
(-2.1)
A 		27
B 28.7
(-0.7)
A 		21.2
(-3)
A 		41
(3)
A 		33.2
(0.6)
A 		34.8
(1.1)
A 		37.3
(1.9)
A 		20
C 18.1
(-1.8)
A 		67.6
(3)
A 		6
(-3)
A 		9.2
(-2.7)
A 		31.7
(-0.5)
A 		43.7
(0.7)
A 		62
avr 17.8
(-3) 		31.9
(3) 		26.8
(0.8) 		23.4
(-0.6) 		29.5
(2) 		30.6
(2.4) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 14.4
(1.3)
M 		18.2
(3)
A 		5.1
(-3)
A 		11.6
(-0)
A 		13
B 17.4
(1.8)
P 		1.2
(-3)
A 		16.8
(1.6)
A 		21.4
(3)
M 		20
C 19
(2.6)
A 		1.5
(-3)
A 		20.4
(3)
A 		14.7
(1.2)
M 		19
avr 16.9
(3) 		7
(-3) 		14.1
(1.3) 		15.9
(2.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.5
(-1.7)
A 		7.3
(3)
A 		7.1
(2.8)
A 		6.6
(2.3)
A 		2.7
(-1.5)
A 		6
B 10
(-0.5)
A 		7
(-3)
A 		10
(-0.5)
A 		8.8
(-1.5)
A 		14.1
(3)
A 		13.9
(2.8)
A 		7
C 6.7
(-1.4)
A 		20.6
(3)
A 		1.5
(-3)
A 		1.8
(-2.9)
A 		10.3
(-0.2)
A 		14.6
(1.1)
A 		19
avr 6
(-2.9) 		10
(2.5) 		6.3
(-2.5) 		5.9
(-3) 		10.3
(2.9) 		10.4
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187405_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18268
Sequence Type Exemplar sequence
Representative Public ID C04E7.3 NCBI
Target Description C04E7.3 /REP_DB=WormBase Gene ID /WP=CE03920 /TR=SW:Q11194 /GB=AAA82328.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075688(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075688 NCBI Caenorhabditis elegans C04E7.3 (C04E7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000030881 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:336896:347194:-1 10/11 None
SNAP00000030875 ENSEMBL cdna:SNAP chromosome:CEL140:X:341764:347194:-1 10/11 None
C04E7.3 ENSEMBL cdna:known chromosome:CEL140:X:344127:346289:-1 gene:C04E7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:344126-346289(-) 98.65 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E7.3
Entrez Gene 180390 Entrez gene
SwissProt Q11194 EMBL-EBI
WormBase CE03920 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82328 Hypothetical protein C04E7.3 [Caenorhabditis elegans] ref|NP_508089.1| C04E7.3 [Caenorhabditis elegans] sp|Q11194|YX23_CAEEL Hypothetical protein C04E7.3 in chromosome X 0.0
blast AAM51510 Hypothetical protein C04E7.4 [Caenorhabditis elegans] ref|NP_741701.1| C04E7.4 [Caenorhabditis elegans] 0.0
blast CAE63673 Hypothetical protein CBG08175 [Caenorhabditis briggsae] 3.0E-20
blast CAE63673 Hypothetical protein CBG08175 [Caenorhabditis briggsae] 6.0E-13
Sequence
Target Sequence 
>C. ELEGANS:187405_AT
gagtggagtggatctgaaatggcgttgaaaagagacaacgaccgataccagagacgaagc
caactgaaaactgcaaataatcgggagctggccaaaaaaatgatgagcatggaaagaaat
gaagttgattttttgagaaatgcaagatatagtaaacacggaaatttgaaagtctggaat
caattcaaatcacttgttaaagctaataaattattagaagaggaaatcatcaaccaaaag
tgtcaagaacttcacgaaataaaatttaaaaccgcggcaaagcccagcttggcaattgaa
aagtcaacaccaacatatcttgaaaatatgctaattgtggacgatcaggagaaagtcaaa
aatatcgatatttcttatctttcgaaagttaatccatctcaccattatcaatggggagaa
gcaaagtggaaaaagattgagcccctgctggcagagttgaaagaaacagaaaatgaagtg
aactgctattacgagaatacaatggggcatgatgttccccaaacttcattaaagacagtg
gataagattctgtggcattttgaacataagtatgatgctataacttgcacggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGGAGTGGATCTGAAATGGCGT 656 401 940 Antisense
GAGACAACGACCGATACCAGAGACG 705 389 971 Antisense
GAGACGAAGCCAACTGAAAACTGCA 18 395 990 Antisense
AACTGCAAATAATCGGGAGCTGGCC 583 141 1008 Antisense
TAAAACCGCGGCAAAGCCCAGCTTG 332 639 1206 Antisense
GGCAAAGCCCAGCTTGGCAATTGAA 465 533 1215 Antisense
GTTAATCCATCTCACCATTATCAAT 69 447 1327 Antisense
GTGGAAAAAGATTGAGCCCCTGCTG 208 491 1365 Antisense
TTGAGCCCCTGCTGGCAGAGTTGAA 465 705 1376 Antisense
GCATGATGTTCCCCAAACTTCATTA 425 309 1446 Antisense
GTATGATGCTATAACTTGCACGGTA 261 455 1509 Antisense
Sequence Source Affymetrix Proprietary Database